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Journal Articles
Hannenhalli S, Putt ME, Gilmore JM, Wang J, Parmacek MS, Epstein JA, Morrisey EE, Margulies KB, Cappola TP.  2006.  Transcriptional Genomics Associates FOX Transcription Factors With Human Heart Failure. Circulation. 114(12):1269-1276.
Hannenhalli S, Putt ME, Gilmore JM, Wang J, Parmacek MS, Epstein JA, Morrisey EE, Margulies KB, Cappola TP.  2006.  Transcriptional Genomics Associates FOX Transcription Factors With Human Heart Failure. Circulation. 114(12):1269-1276.
Dingermann T, Sharp S, Appel B, DeFranco D, Mount SM, Heiermann R, Pongs O, Söll D.  1981.  Transcription of cloned tRNA and 5S RNA genes in a Drosophila cell free extract. Nucleic Acids ResearchNucl. Acids Res.. 9(16):3907-3918.
Brough J, Schwartz M, Gupta SK, Anand D, Kavetsky R, Pettersen R.  2007.  Towards the development of a virtual environment-based training system for mechanical assembly operations. Virtual Reality. 11(4):189-206.
Yoon I, Sussman A, Memon AM, Porter A.  2011.  Towards incremental component compatibility testing. Proceedings of the 14th international ACM Sigsoft symposium on Component based software engineering, CBSE. 11:119-128.
Martin, M.P, Weirs G, Candler GV, Piomelli U, Johnson H, Nompelis I.  2000.  Toward the large-eddy simulation over a hypersonic elliptical cross-section cone. AIAA Paper No. 00-2311.
Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.
Marchionini G, Haas S, Plaisant C, Shneiderman B, Hert C.  2005.  Toward a Statistical Knowledge Network (2004). Institute for Systems Research Technical Reports.
Plaisant C, Sears A.  1992.  Touchscreen interfaces for alphanumeric data entry. Human Factors and Ergonomics Society Annual Meeting Proceedings. 36(4):293-297.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Nirkhe M, Kraus S, Perlis D.  1995.  Thinking takes time: a modal active-logic for reasoning in time. Proc. of BISFAI-95.
Perlis D.  1990.  Thing and Thought. Knowledge Representation and Defeasible Reasoning. Kluwer.
Perlis D.  2006.  Theory and Application of Self-Reference: Logic and Beyond. Self-reference. 178:121-121.
Harris C, Allen RB, Plaisant C, Shneiderman B.  1999.  Temporal visualization for legal case histories. PROCEEDINGS OF THE ANNUAL MEETING-AMERICAN SOCIETY FOR INFORMATION SCIENCE. 36:271-279.
Wang TD, Plaisant C, Shneiderman B, Spring N, Roseman D, Marchand G, Mukherjee V, Smith M.  2009.  Temporal Summaries: Supporting Temporal Categorical Searching, Aggregation and Comparison. Visualization and Computer Graphics, IEEE Transactions on. 15(6):1049-1056.
Wang TD, Plaisant C, Shneiderman B, Spring N, Roseman D, Marchand G, Mukherjee V, Smith M.  2009.  Temporal Summaries: Supporting Temporal Categorical Searching, Aggregation and Comparison. IEEE Transactions on Visualization and Computer Graphics. 15(6):1049-1056.
Louis VR, Gillespie IA, O'Brien SJ, Russek-Cohen E, Pearson AD, Colwell RR.  2005.  Temperature-Driven Campylobacter Seasonality in England and Wales. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 71(1):85-92.
Haran M, Karr A, Last M, Orso A, Porter A, Sanil A, Fouch? S.  2007.  Techniques for Classifying Executions of Deployed Software to Support Software Engineering Tasks. IEEE Transactions on Software Engineering. 33(5):287-304.
Porter A, Yilmaz C, Memon AM, Krishna AS, Schmidt DC, Gokhale A.  2006.  Techniques and processes for improving the quality and performance of open-source software. Software Process: Improvement and Practice. 11(2):163-176.
Ahn JW, Plaisant C, Shneiderman B.  2011.  A task taxonomy of network evolution analysis. University of Maryland, Human-Computer Interaction Lab Tech Report HCIL-2011-09.
Kuter U, Nau DS, Pistore M, Traverso P.  2009.  Task decomposition on abstract states, for planning under nondeterminism. Artificial Intelligence. 173(5–6):669-695.
Papadimitriou P, Tsaparas P, Fuxman A, Getoor L.  2012.  TACI: Taxonomy-Aware Catalog Integration. IEEE Transactions on Knowledge and Data Engineering (TKDE).
Anderson ML, Perlis D.  2002.  Symbol systems. Encyclopedia of Cognitive Science.
RodrIGuez A, Grushin A, Reggia JA, HAUPTMAN AMI, SIPPER M, PAN Z, Reggia JA, GAO D, DARABOS C, GIACOBINI M et al..  2007.  Swarm Intelligence Systems Using Guided Self-Organization for Collective Problem Solving. Advances in Complex Systems. 10(1):5-34.

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