Publications

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Journal Articles
Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.
Sane N, Kee H, Seetharaman G, Bhattacharyya SS.  2011.  Topological Patterns for Scalable Representation and Analysis of Dataflow Graphs. Journal of Signal Processing Systems. 65(2):229-244.
Berkman O, JaJa JF, Krishnamurthy S, Thurimella R, Vishkin U.  1994.  Top-Bottom Routing around a Rectangle is as Easy as Computing Prefix Minima. SIAM Journal on Computing. 23(3):449-465.
Kolker R, Shneiderman B.  1996.  Tools for creating and exploiting content. Getty Art History Information Program (1996) Research Agenda for Networked Cultural Heritage, Santa Monica. CA: Getty AHIP. :27-30.
Khuller S, Malekian A, Mestre J.  2007.  To fill or not to fill: the gas station problem. Algorithms–ESA 2007. :534-545.
Katz J, Yung M.  2002.  Threshold cryptosystems based on factoring. Advances in Cryptology—ASIACRYPT 2002. :139-147.
Madabhushi R, Korman CE, Mayergoyz ID.  1996.  A three-dimensional MOSFET solver implementing the fixed point iteration technique. Solid-State Electronics. 39(1):147-157.
Kerr DC, Goldsman N, Mayergoyz ID.  1998.  Three-Dimensional Hydrodynamic Modeling of MOSFET Devices. VLSI Design. 6(1-4):261-265.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Nirkhe M, Kraus S, Perlis D.  1995.  Thinking takes time: a modal active-logic for reasoning in time. Proc. of BISFAI-95.
Losiewicz P, Oard D, Kostoff RN.  2000.  Textual data mining to support science and technology management. Journal of Intelligent Information Systems. 15(2):99-119.
Dix J, Kraus S, V.S. Subrahmanian.  2001.  Temporal agent programs. Artificial Intelligence. 127(1):87-135.
Kimes NE, Grim CJ, Johnson WR, Hasan NA, Tall BD, Kothary MH, Kiss H, Munk CA, Tapia R, Green L et al..  2011.  Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. The ISME Journal. 6(4):835-846.
Kimes NE, Grim CJ, Johnson WR, Hasan NA, Tall BD, Kothary MH, Kiss H, Munk CA, Tapia R, Green L et al..  2011.  Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. The ISME Journal. 6(4):835-846.
Kimes NE, Grim CJ, Johnson WR, Hasan NA, Tall BD, Kothary MH, Kiss H, Munk CA, Tapia R, Green L et al..  2011.  Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. The ISME Journal. 6(4):835-846.
Krishnamurthy S, Chandrasekaran S, Cooper O, Deshpande A, Franklin MJ, Hellerstein JM, Hong W, Madden S, Reiss F, Shah MA.  2003.  TelegraphCQ: An architectural status report. IEEE Data Engineering Bulletin. 26(1):11-18.
Haran M, Karr A, Last M, Orso A, Porter A, Sanil A, Fouch? S.  2007.  Techniques for Classifying Executions of Deployed Software to Support Software Engineering Tasks. IEEE Transactions on Software Engineering. 33(5):287-304.
Porter A, Yilmaz C, Memon AM, Krishna AS, Schmidt DC, Gokhale A.  2006.  Techniques and processes for improving the quality and performance of open-source software. Software Process: Improvement and Practice. 11(2):163-176.
Kuter U, Nau DS, Pistore M, Traverso P.  2009.  Task decomposition on abstract states, for planning under nondeterminism. Artificial Intelligence. 173(5–6):669-695.
Kolagotla RK, Yu SS, JaJa JF.  1993.  Systolic architectures for finite-state vector quantization. The Journal of VLSI Signal Processing. 5(2):249-259.
Snelick R, JaJa JF, Kacker R, Lyon G.  2006.  Synthetic‐perturbation techniques for screening shared memory programs. Software: Practice and Experience. 24(8):679-701.
Kingsford C, Marçais G.  2009.  A synthesis for exactly 3-edge-connected graphs. Arxiv preprint arXiv:0905.1053.

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