Publications

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Erman J, Gerber A, Hajiaghayi MT, Pei D, Spatscheck O.  2009.  Network-aware forward caching. Proceedings of the 18th international conference on World wide web. :291-300.
Ertl T, Hamann B, Varshney A.  2000.  Visualization 2000.
Ertugay O, Hicks MW, Smith J, Kornblum J.  2000.  Agents in Network Management. Technical Reports (CIS).
Erway C, Küp\ccü A, Papamanthou C, Tamassia R.  2009.  Dynamic Provable Data Possession. CCS '09 Proceedings of the 16th ACM Conference on Computer and Communications Security . :213-222.
Espeland EM, Lipp EK, Huq A, Colwell RR.  2004.  Polylysogeny and prophage induction by secondary infection in Vibrio cholerae. Environmental Microbiology. 6(7):760-763.
Essien K, Hannenhalli S, Stoeckert CJ.  2008.  Computational Analysis of Constraints on Noncoding Regions, Coding Regions and Gene Expression in Relation to Plasmodium Phenotypic Diversity. PLoS ONEPLoS ONE. 3(9):e3122-e3122.
Essien K, Vigneau S, Apreleva S, Singh LN, Bartolomei MS, Hannenhalli S.  2009.  CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features. Genome Biology. 10(11):R131-R131.
Esteves K, Hervio-Heath D, Mosser T, Rodier C, Tournoud M-G, Jumas-Bilak E, Colwell RR, Monfort P.  2015.  Rapid Proliferation of Vibrio parahaemolyticus, Vibrio vulnificus, and Vibrio cholerae during Freshwater Flash Floods in French Mediterranean Coastal Lagoons. Applied and Environmental Microbiology. (21):7600-7609.
Etemad K, Doermann D, Chellappa R.  1994.  Page Segmentation Using Decision Integration and Wavelet Packet Basis. ICPR. :345-349.
Etemad K, Doermann D, Chellappa R.  1997.  Multiscale Document Page Segmentation Using Soft Decision Integration. IEEE Transactions on Pattern Analysis and Machine Intelligence. :92-96.
Etemad K, Doermann D, Chellappa R.  1994.  Document page decomposition by integration of distributed soft decisions. International Conference on Neural Networks. :4022-4027.
Etherington DW, Kraus S, Perlis D.  1991.  Nonmonotonicity and the scope of reasoning. Artificial Intelligence. 52(3):221-261.
Etherington DW, Kraus S, Perlis D.  1990.  Limited scope and circumscriptive reasoning. International Journal of Expert Systems. 3(3):207-217.
Eubank S, Kumar VSA, Marathe MV, Srinivasan A, Wang N.  2006.  Structure of social contact networks and their impact on epidemics. DIMACS Series in Discrete Mathematics and Theoretical Computer Science. 70:181-181.
Eubank S, Kumar AVS, Marathe MV, Srinivasan A, Wang N.  2004.  Structural and algorithmic aspects of massive social networks. Proceedings of the fifteenth annual ACM-SIAM symposium on Discrete algorithms. :718-727.
Eubank S, Guclu H, Kumar AVS, Marathe MV, Srinivasan A, Toroczkai Z|[aacute]|n, Wang N.  2004.  Modelling disease outbreaks in realistic urban social networks. Nature. 429(6988):180-184.
Evans F, Skiena S, Varshney A.  1996.  Optimizing triangle strips for fast rendering. Visualization '96. Proceedings.. :319-326.
Evans F, Skiena S, Varshney A.  1997.  Efficient triangle strips for fast rendering. ACM Transactions on Graphics.
Evans F, Skiena S, Varshney A.  1996.  Stripe: a software tool for efficient triangle strips. ACM SIGGRAPH 96 Visual Proceedings: The art and interdisciplinary programs of SIGGRAPH '96. :153–-153–.
Evans P, Donahue G, Hannenhalli S.  2006.  Conservation Patterns in cis-Elements Reveal Compensatory Mutations. Comparative GenomicsComparative Genomics. 4205:186-199.
Evans F, Skiena S, Varshney A.  2002.  System and method for entering text in a virtual environment. : 09/364,433(6407679)
Everett L, Hansen M, Hannenhalli S.  2010.  Regulating the Regulators: Modulators of Transcription Factor Activity. Computational Biology of Transcription Factor BindingComputational Biology of Transcription Factor Binding. 674:297-312.
Everett L, Vo A, Hannenhalli S.  2009.  PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic Acids ResearchNucleic Acids Research. 37(Database):D66-D71-D66-D71.
Everett L, Wang L-S, Hannenhalli S.  2006.  Dense Subgraph Computation Via Stochastic Search: Application to Detect Transcriptional Modules. BioinformaticsBioinformatics. 22(14):e117-e123-e117-e123.
Everett LJ, Jensen ST, Hannenhalli S.  2011.  Transcriptional Regulation Via TF-Modifying Enzymes: An Integrative Model-Based Analysis. Nucleic Acids ResearchNucl. Acids Res.. 39(12):e78-e78-e78-e78.

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