Publications

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Journal Articles
Zotenko E, O'Leary DP, Przytycka TM.  2006.  Secondary Structure Spatial Conformation Footprint: A Novel Method for Fast Protein Structure Comparison and Classification. BMC Structural Biology. 6(12)
Pillai J, Patel VM, Chellappa R, Ratha N.  2010.  Secure and robust iris recognition using random projections and sparse representations. Pattern Analysis and Machine Intelligence, IEEE Transactions on. (99):1-1.
Pillai J, Patel VM, Chellappa R, Ratha N.  2010.  Secure and robust iris recognition using random projections and sparse representations. Pattern Analysis and Machine Intelligence, IEEE Transactions on. (99):1-1.
Mishra A, Petroni Jr NL, Arbaugh WA, Fraser T.  2004.  Security issues in IEEE 802.11 wireless local area networks: a survey. Wireless Communications and Mobile Computing. 4(8):821-833.
Chalfoun J, Kociolek M, Dima A, Halter M, Cardone A, Peskin A, Bajcsy P, Brady M.  2013.  Segmenting time-lapse phase contrast images of adjacent NIH 3T3 cells.. Journal of microscopy. 249(1):41-52.
Cignoni P, De Floriani L, Magillo P, Puppo E, Scopigno R.  2004.  Selective refinement queries for volume visualization of unstructured tetrahedral meshes. Visualization and Computer Graphics, IEEE Transactions on. 10(1):29-45.
Anderson ML, Fults S, Josyula DP, Oates T, Perlis D, Wilson S, Wright D.  2008.  A self-help guide for autonomous systems. AI Magazine. 29(2):67-67.
Basili VR, Zelkowitz MV, McGarry F, Page J, Waligora S, Pajerski R.  1995.  SEL's software process improvement program. Software, IEEE. 12(6):83-87.
Basili VR, Zelkowitz MV, McGarry F, Page J, Waligora S, Pajerski R.  1995.  SEL's software process improvement program. Software, IEEE. 12(6):83-87.
Papaleo L, De Floriani L.  2009.  Semantic-based segmentation and annotation of 3d models. Image Analysis and Processing–ICIAP 2009. :103-112.
El-Sayed NM, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al..  2003.  The sequence and analysis of Trypanosoma brucei chromosome II. Nucleic acids research. 31(16):4856-4856.
Pepling M, Mount SM.  1990.  Sequence of a cDNA from the Drosophila melanogaster white gene.. Nucleic Acids ResearchNucleic Acids Res. 18(6):1633-1633.
Salzberg SL, Hotopp J CD, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC.  2005.  Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biology. 6(3):R23-R23.
Banerjee S, Lee S, Braud R, Bhattacharjee B, Srinivasan A, Chu Y, Zhang H, Sinha R, Papadopoulos C, Boustead P et al..  2004.  SESSION 2: STREAMING. Proceedings of the 14th International Workshop on Network and Operating Systems Support for Digital Audio and Video: NOSSDAV 2003: June 16-18, 2004, Cork, Ireland. :3-3.
Chong W, O'Donovan-Anderson M, Okamoto Y, Perlis D.  2003.  Seven days in the life of a robotic agent. Innovative Concepts for Agent-Based Systems. :243-256.
Fermin DR, Barac A, Lee S, Polster SP, Hannenhalli S, Bergemann TL, Grindle S, Dyke DB, Pagani F, Miller LW et al..  2008.  Sex and Age Dimorphism of Myocardial Gene Expression in Nonischemic Human Heart Failure. Circulation: Cardiovascular Genetics. 1(2):117-125.
Fermin DR, Barac A, Lee S, Polster SP, Hannenhalli S, Bergemann TL, Grindle S, Dyke DB, Pagani F, Miller LW et al..  2008.  Sex and Age Dimorphism of Myocardial Gene Expression in Nonischemic Human Heart Failure. Circulation: Cardiovascular Genetics. 1(2):117-125.
Plaisant C, Clamage A, Hutchinson H B, Bederson BB, Druin A.  2006.  Shared family calendars: Promoting symmetry and accessibility. ACM Trans. Comput.-Hum. Interact.. 13(3):313-346.
Patel VM, Easley GR, Healy DM.  2009.  Shearlet-Based Deconvolution. IEEE Transactions on Image Processing. 18(12):2673-2685.
Jain AK, Chellappa R, Draper SC, Memon N, Phillips PJ, Vetro A.  2007.  Signal Processing for Biometric Systems [DSP Forum]. Signal Processing Magazine, IEEE. 24(6):146-152.
Reggia JA, Armentrout SL, Chou HH, Peng Y.  1993.  Simple systems that exhibit template-directed replication. Science. 259:1282-1287.
Maslov V, Pugh W.  1994.  Simplifying polynomial constraints over integers to make dependence analysis more precise. Parallel Processing: CONPAR 94—VAPP VI. :737-748.
Kurc T, Catalyurek U, Zhang X, Saltz J, Martino R, Wheeler M, Peszyńska M, Sussman A, Hansen C, Sen M et al..  2005.  A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies. Concurrency and Computation: Practice and Experience. 17(11):1441-1467.
Pugh W, Shpeisman T.  1999.  SIPR: A new framework for generating efficient code for sparse matrix computations. Languages and Compilers for Parallel Computing. :213-229.
Pugh W.  1990.  Skip lists: a probabilistic alternative to balanced trees. Communications of the ACMCommun. ACM. 33(6):668-676.

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