Publications

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2009
Patel VM, Easley GR, Chellappa R, Healy DM.  2009.  Enhancing sparsity using gradients for compressive sensing. Image Processing (ICIP), 2009 16th IEEE International Conference on. :3033-3036.
Takala SL, Coulibaly D, Thera MA, Batchelor AH, Cummings MP, Escalante AA, Ouattara A, Traoré K, Niangaly A, Djimdé AA et al..  2009.  Extreme polymorphism in a vaccine antigen and risk of clinical malaria: implications for vaccine development. Sci Transl Med. 1(2):2ra5-2ra5.
Mohammad S, Dorr BJ, Egan M, Hassan A, Muthukrishan P, Qazvinian V, Radev D, Zajic D.  2009.  Generating surveys of scientific paradigms. Proceedings of HLT-NAACL.
Grinter RE, W. Edwards K, Chetty M, Poole ES, Sung J-Y, Yang J, Crabtree A, Tolmie P, Rodden T, Greenhalgh C et al..  2009.  The Ins and Outs of Home Networking: The Case for Useful and Usable Domestic Networking. ACM Trans. Comput.-Hum. Interact.. 16(2):8:1-8:28.
Easley GR, Patel VM, Healy Jr DM.  2009.  Inverse halftoning using a shearlet representation. Proceedings of SPIE. 7446:74460C-74460C.
V.S. Subrahmanian, Ernst J.  2009.  Method and system for optimal data diagnosis. 10/774,516(7474987)
Hansen M, Everett L, Singh L, Hannenhalli S.  2009.  Mimosa: mixture model of co-expression to detect modulators of regulatory interaction. Proceedings of the 9th international conference on Algorithms in bioinformatics. :133-144.
Erman J, Gerber A, Hajiaghayi MT, Pei D, Spatscheck O.  2009.  Network-aware forward caching. Proceedings of the 18th international conference on World wide web. :291-300.
Elsayed T, Jimmy Lin, Oard D.  2009.  Pairwise Document Similarity in Large Collections with MapReduce. Relation. 10(1.91):8372-8372.
Eng KH, Corrada Bravo H, Keleş S.  2009.  A phylogenetic mixture model for the evolution of gene expression. Molecular biology and evolution. 26(10):2363-2363.
Everett L, Vo A, Hannenhalli S.  2009.  PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic Acids ResearchNucleic Acids Research. 37(Database):D66-D71-D66-D71.
Froehlich J, Everitt K, Fogarty J, Patel S, Landay J.  2009.  Sensing opportunities for personalized feedback technology to reduce consumption. Proc. CHI Workshop on Defining the Role of HCI in the Challenge of Sustainability.
Alam M, Chowdhury WB, Bhuiyan NA, Islam A, Hasan NA, Nair BG, Watanabe H, Siddique AK, Huq A, Sack BR et al..  2009.  Serogroup, Virulence, and Genetic Traits of Vibrio Parahaemolyticus in the Estuarine Ecosystem of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75(19):6268-6274.
Eaton E, desJardins M.  2009.  Set-Based Boosting for Instance-Level Transfer. Data Mining Workshops, 2009. ICDMW '09. IEEE International Conference on. :422-428.
Patel VM, Easley GR, Healy DM.  2009.  Shearlet-Based Deconvolution. IEEE Transactions on Image Processing. 18(12):2673-2685.
Zhang N, Wang Q, Ehlinger A, Randles L, Lary JW, Kang Y, Haririnia A, Storaska AJ, Cole JL, Fushman D et al..  2009.  Structure of the S5a:K48-Linked Diubiquitin Complex and Its Interactions with Rpn13. Molecular Cell. 35(3):280-290.
Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.
Mohammad S, Dorr BJ, Egan M, Hassan A, Muthukrishan P, Qazvinian V, Radev D, Zajic D.  2009.  Using citations to generate surveys of scientific paradigms. Proceedings of Human Language Technologies: The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics. :584-592.
2008
Sen P, Namata G, Bilgic M, Getoor L, Galligher B, Eliassi-Rad T.  2008.  Collective Classification in Network Data. AI Magazine. 29(3):93-93.
Essien K, Hannenhalli S, Stoeckert CJ.  2008.  Computational Analysis of Constraints on Noncoding Regions, Coding Regions and Gene Expression in Relation to Plasmodium Phenotypic Diversity. PLoS ONEPLoS ONE. 3(9):e3122-e3122.
Xue F, Elman H.  2008.  Convergence analysis of iterative solvers in inexact Rayleigh quotient iteration. CONVERGENCE. 31(3):877-899.
Basili VR, Dangle K, Esker L, Marotta F, Rus I, Brosgol BM, Jamin S, Arthur JD, Ravichandar R, Wisnosky DE.  2008.  CrossTalk: The Journal of Defense Software Engineering. Volume 21, Number 10, October 2008.
Corrada Bravo H, Eng KH, Keles S, Wahba G, Wright S.  2008.  Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming with an Application to Phylogenetic Analysis of Gene Expression. 1142
Elman H, Furnival DG, Powell CE.  2008.  H (div) preconditioning for a mixed finite element formulation of the stochastic diffusion problem.
Basili VR, Marotta F, Dangle K, Esker L, Rus I.  2008.  Measures and Risk Indicators for Early Insight into Software Safety. Development of Fault-Tolerant Systems.

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