Publications

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2013
Khan Z, Ford MJ, Cusanovich DA, Mitrano A, Pritchard JK, Gilad Y.  2013.  Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures. Science. 342(6162):1100-1104.
Ye P, Kumar J, Kang L, Doermann D.  2013.  Real-time No-Reference Image Quality Assessment based on Filter Learning. International Conference on Computer Vision and Pattern Recognition (CVPR).
Ye P, Kumar J, Kang L, Doermann D.  2013.  Real-time No-Reference Image Quality Assessment based on Filter Learning. International Conference on Computer Vision and Pattern Recognition (CVPR).
Chalfoun J, Kociolek M, Dima A, Halter M, Cardone A, Peskin A, Bajcsy P, Brady M.  2013.  Segmenting time-lapse phase contrast images of adjacent NIH 3T3 cells.. Journal of microscopy. 249(1):41-52.
Kumar J, Ye P, Doermann D.  2013.  Structural similarity for document image classification and retrieval. Pattern Recognition Letters.
Kumar J, Doermann D.  2013.  Unsupervised Classification of Structurally Similar Document Images. International Conference on Document Analysis and Recognition.
Bitansky N, Dachman-Soled D, Garg S, Jain A, Kalai YTauman, López-Alt A, Wichs D.  2013.  Why “Fiat-Shamir for Proofs” Lacks a Proof. Theory of Cryptography. :182-201.
2012
W Easterday R, Kausrud KL, Star B, Heier L, Haley BJ, Ageyev V, Colwell RR, Stenseth NChr.  2012.  An additional step in the transmission of Yersinia pestis? The ISME Journal. (2):231-236.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O’Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O’Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O’Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lumezanu C, Feamster N, Klein H.  2012.  #bias: Measuring the Tweeting Behavior of Propagandists. Sixth International AAAI Conference on Weblogs and Social Media.
Nikolova S, Boyd-Graber J, Fellbaum C.  2012.  Collecting Semantic Similarity Ratings to Connect Concepts in Assistive Communication Tools. Modeling, Learning, and Processing of Text Technological Data StructuresModeling, Learning, and Processing of Text Technological Data Structures. 370:81-93.
Dachman-Soled D, Gennaro R, Krawczyk H, Malkin T.  2012.  Computational Extractors and Pseudorandomness. Theory of Cryptography. :383-403.
Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S.  2012.  Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease. PloS one. 7(6)
Huq A, Haley BJ, Taviani E, Chen A, Hasan NA, Colwell RR.  2012.  Detection, Isolation, and Identification of Vibrio cholerae from the Environment. Current Protocols in Microbiology. 26(1)
Wang Y-C, Khan Z, Kaschube M, Wieschaus EF.  2012.  Differential positioning of adherens junctions is associated with initiation of epithelial folding. Nature. 484(7394):390-393.
Wang Y-C, Khan Z, Kaschube M, Wieschaus EF.  2012.  Differential positioning of adherens junctions is associated with initiation of epithelial folding. Nature. 484(7394):390-393.
Nelson KS, Khan Z, Molnár I, Mihály J, Kaschube M, Beitel GJ.  2012.  Drosophila Src regulates anisotropic apical surface growth to control epithelial tube size. Nature Cell Biology. 14(5):518-525.
Nelson KS, Khan Z, Molnár I, Mihály J, Kaschube M, Beitel GJ.  2012.  Drosophila Src regulates anisotropic apical surface growth to control epithelial tube size. Nature Cell Biology. 14(5):518-525.
Kamara S, Papamanthou C, Roeder T.  2012.  Dynamic Searchable Symmetric Encryption. CCS '12 Proceedings of the 2012 ACM Conference on Computer and Communications Security . :965-976.
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M et al..  2012.  GAGE: A Critical Evaluation of Genome Assemblies and Assembly Algorithms. Genome Research. 22(3):557-567.
Kelley DR, Liu B, Delcher AL, Pop M, Salzberg SL.  2012.  Gene Prediction with Glimmer for Metagenomic Sequences Augmented by Classification and Clustering. Nucleic Acids ResearchNucl. Acids Res.. 40(1):e9-e9-e9-e9.
Blanco MAndres, LeRoy G, Khan Z, Alečković M, Zee BM, Garcia BA, Kang Y.  2012.  Global secretome analysis identifies novel mediators of bone metastasis. Cell Research. 22(9):1339-1355.
Blanco MAndres, LeRoy G, Khan Z, Alečković M, Zee BM, Garcia BA, Kang Y.  2012.  Global secretome analysis identifies novel mediators of bone metastasis. Cell Research. 22(9):1339-1355.

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