Publications

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2014
Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT et al..  2014.  Phylodynamic Analysis of Clinical and Environmental Vibrio cholerae Isolates from Haiti Reveals Diversification Driven by Positive Selection. mBio. (6)
Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT et al..  2014.  Phylodynamic Analysis of Clinical and Environmental Vibrio cholerae Isolates from Haiti Reveals Diversification Driven by Positive Selection. mBio. (6)
2013
Fong A, Ashktorab Z, Froehlich J.  2013.  Bear-with-me: an embodied prototype to explore tangible two-way exchanges of emotional language. CHI'13 Extended Abstracts on Human Factors in Computing Systems.
Agrawal M, Doermann D.  2013.  Clutter noise removal in binary document images. International Journal on Document Analysis and Recognition (IJDAR). 16(4):351-369.
Rashid A, Haley BJ, Rajabov M, Ahmadova S, Gurbanov S, Colwell RR, Huq A.  2013.  Detection of Vibrio cholerae in environmental waters including drinking water reservoirs of Azerbaijan. Environmental Microbiology Reports. (1):30-38.
Nguyen V-A, Boyd-Graber J, Altschul SF.  2013.  Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein Space. Journal of Computational Biology. 20PDF icon cmb%2E2012%2E0244.pdf (292.43 KB)
Hasan NA, Ceccarelli D, Grim CJ, Taviani E, Choi J, Sadique A, Alam M, Siddique AK, R. Sack B, Huq A et al..  2013.  Distribution of Virulence Genes in Clinical and Environmental Vibrio cholerae Strains in Bangladesh. Applied and Environmental Microbiology. (18):5782-5785.
Chomvarin C., Johura F.-T., Mannan S.B, Jumroenjit W., Kanoktippornchai B., Tangkanakul W., Tantisuwichwong N., Huttayananont S., Watanabe H., Hasan N.A et al..  2013.  Drug response and genetic properties of Vibrio cholerae associated with endemic cholera in north-eastern Thailand, 2003-2011. Journal of Medical Microbiology. :599-609.
Clements JD, Connell ND, Dirks C, El-Faham M, Hay A, Heitman E, Stith JH, Bond EC, Colwell RR, Anestidou L et al..  2013.  Engaging Actively with Issues in the Responsible Conduct of Science: Lessons from International Efforts Are Relevant for Undergraduate Education in the United States. CBE—Life Sciences Education. (4):596-603.
Huq A, Hasan N, Akanda A, Whitcombe E, Colwell RR, Haley B, Alam M, Jutla A, R. Sack B.  2013.  Environmental Factors Influencing Epidemic Cholera. The American Journal of Tropical Medicine and Hygiene. 89(3):597-607.
Huq A, Hasan N, Akanda A, Whitcombe E, Colwell RR, Haley B, Alam M, Jutla A, R. Sack B.  2013.  Environmental Factors Influencing Epidemic Cholera. The American Journal of Tropical Medicine and Hygiene. 89(3):597-607.
Hara K, Azenkot S, Campbell M, Bennett CL, Le V, Pannella S, Moore R, Minckler K, Ng RH, Froehlich J.  2013.  Improving public transit accessibility for blind riders by crowdsourcing bus stop landmark locations with Google street view. The 15th International ACM SIGACCESS Conference. :16-8.
Du X, Abdalmageed W, Doermann D.  2013.  Large-Scale Signature Matching Using Multi-stage Hashing. Document Analysis and Recognition (ICDAR), 2013 12th International Conference on. :976-980.
Mozumder PK, Nahar S, M Naser N, Alam M, Huq A, R Sack B, Colwell RR.  2013.  Species composition of limnetic zooplankton from the southern coastal areas (Mathbaria and Bakerganj) in Bangladesh. Journal of the Asiatic Society of Bangladesh, Science. 38(1)
Jutla A, Akanda AShafqat, Huq A, Faruque ASyed Golam, Colwell RR, Islam S.  2013.  A water marker monitored by satellites to predict seasonal endemic cholera. Remote Sensing Letters. 4472741982394456(8):822-831.
2012
W Easterday R, Kausrud KL, Star B, Heier L, Haley BJ, Ageyev V, Colwell RR, Stenseth NChr.  2012.  An additional step in the transmission of Yersinia pestis? The ISME Journal. (2):231-236.
Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP et al..  2012.  BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst Biol. 61(1):170-173.
Cardone A, Amelot J, Li-Baboud Y-S, Brady M, Bajcsy P.  2012.  Biases from model assumptions in texture sub-cellular image segmentation. SPIE Newsroom. 13
Larson E, Froehlich J, Campbell T, Haggerty C, Atlas L, Fogarty J, Patel SN.  2012.  Disaggregated water sensing from a single, pressure-based sensor: An extended analysis of HydroSense using staged experiments. Pervasive and Mobile Computing. 8(1):82-102.
Larson E, Froehlich J, Campbell T, Haggerty C, Atlas L, Fogarty J, Patel SN.  2012.  Fast track article: Disaggregated water sensing from a single, pressure-based sensor: An extended analysis of HydroSense using staged experiments. Pervasive Mob. Comput.. 8(1):82-102.
Methé BA, Nelson KE, Pop M, Creasy HH, Giglio MG, Huttenhower C, Gevers D, Petrosino JF, Abubucker S, Badger JH.  2012.  A framework for human microbiome research. Nature. 486:215-221.
Rashed S.M, Mannan S.B, Johura F.-T., Islam M.T, Sadique A., Watanabe H., Sack R.B, Huq A., Colwell RR, Cravioto A. et al..  2012.  Genetic characteristics of drug-resistant Vibrio cholerae O1 causing endemic cholera in Dhaka, 2006-2011. Journal of Medical Microbiology. :1736-1745.
Hasan N.A, Choi S.Y, Eppinger M., Clark P.W, Chen A., Alam M., Haley B.J, Taviani E., Hine E., Su Q. et al..  2012.  Genomic diversity of 2010 Haitian cholera outbreak strains. Proceedings of the National Academy of Sciences. :E2010-E2017.
Blanco MAndres, LeRoy G, Khan Z, Alečković M, Zee BM, Garcia BA, Kang Y.  2012.  Global secretome analysis identifies novel mediators of bone metastasis. Cell Research. 22(9):1339-1355.
Arlt S, Banerjee I, Bertolini C, Memon AM, Schäf M.  2012.  Grey-box GUI Testing: Efficient Generation of Event Sequences. arXiv:1205.4928.

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