Publications

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Wu H, Irizarry RA, Corrada Bravo H.  2010.  Intensity normalization improves color calling in SOLiD sequencing. Nat MethNat Meth. 7(5):336-337.
Wang L-S, Jensen S, Hannenhalli S.  2006.  An Interaction-Dependent Model for Transcription Factor Binding. Systems Biology and Regulatory GenomicsSystems Biology and Regulatory Genomics. 4023:225-234.
Iwerks GS, Samet H.  2003.  The internet spatial spreadsheet: enabling remote visualization of dynamic spatial data and ongoing query results over a network. Proceedings of the 11th ACM international symposium on Advances in geographic information systems. :154-160.
Shneiderman B, Lazar J, IVORY M.  2003.  INTRODUCTION TO VOLUME 1, ISSUE 3: WEB NAVIGATION. IT&SOCIETY. 1(3)
Ishita E, Oard D, Fleischmann KR, Cheng AS, Templeton TC.  2010.  Investigating multi-label classification for human values. Proceedings of the American Society for Information Science and Technology. 47(1):1-4.
Alam M, Islam TM, Rashed S M, Johura F-T, Bhuiyan NA, Delgado G, Morales R, Mendez J L, Navarro A, Watanabe H et al..  2012.  Vibrio Cholerae Classical Biotype Strains Reveal Distinct Signatures in Mexico. Journal of Clinical Microbiology.
Haley BJ, Chen A, Grim CJ, Clark P, Diaz CM, Taviani E, Hasan NA, Sancomb E, Elnemr WM, Islam MA et al..  2012.  Vibrio cholerae in a historically cholera-free country. Environmental Microbiology Reports. (4):381-389.
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Ilghami O, Muñoz-Avila H, Nau DS, Aha DW.  2005.  Learning approximate preconditions for methods in hierarchical plans. :337-344.
Ilghami O, Nau DS, Muñoz-Avila H, Aha DW.  2005.  Learning preconditions for planning from plan traces and HTN structure. Computational Intelligence. 21(4):388-413.
Ilghami O, Nau DS, Munoz-Avila H.  2006.  Learning to do HTN planning. :390-393.
Song Z, Ismael S, Grimes S, Doermann D, Strassel S.  2012.  Linguistic Resources for Handwriting Recognition and Translation Evaluation. Eight International Conference on Language Resources and Evaluation (LREC'12).
Bǎdoiu M, Demaine ED, Hajiaghayi MT, Indyk P.  2004.  Low-dimensional embedding with extra information. Proceedings of the twentieth annual symposium on Computational geometry. :320-329.
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Bel N, Dorr BJ, Hovy E, Knight K, Iida H, Boitet C, Maegaard B, Wilks Y.  1999.  Machine Translation. Multilingual Information Management: Current Levels and Future Abilities. :18-18.
Iwerks GS, Samet H, Smith KP.  2006.  Maintenance of K-nn and spatial join queries on continuously moving points. ACM Trans. Database Syst.. 31(2):485-536.
Iwerks GS, Samet H, Smith KP.  2004.  Maintenance of Spatial Semijoin Queries on Moving Points. Proceedings 2004 VLDB ConferenceProceedings 2004 VLDB Conference. :828-839.
Patro R, Ip C Y, Bista S, Cho SS, Thirumalai D, Varshney A.  2011.  MDMap: A system for data-driven layout and exploration of molecular dynamics simulations. Biological Data Visualization (BioVis), 2011 IEEE Symposium on. :111-118.
Al-Hebshi NNoor, Baraniya D, Chen T, Hill J, Puri S, Tellez M, Hassan NA, Colwell RR, Ismail A.  2019.  Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children. Journal of Oral Microbiology. (118):1557986.
Aravamudan M, Kumaran K, Ramakrishnan K G, Srinivasan A.  2004.  Method of designing signaling networks for internet telephony. : 09/517,658(6687363)
Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AShakur, Bornman DM et al..  2014.  Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing. PLoS ONE. (5):e97699.
Irizarry RA, Corrada Bravo H.  2009.  Model-based quality assessment and base-calling for second-generation sequencing data. Johns Hopkins University, Dept. of Biostatistics Working Papers. :184-184.
Rahaman M.Habibur, Islam T, Colwell RR, Alam M.  2015.  Molecular tools in understanding the evolution of Vibrio cholerae. Frontiers in Microbiology. (e0120311154e00398-13822020380817190)
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Herrmann JW, Cooper J, Gupta SK, Hayes CC, Ishii K, Kazmer D, Sandborn PA, Wood WH.  2004.  New directions in design for manufacturing. :1-9.
Chekuri C, Gal A, Im S, Khuller S, Li J, McCutchen R, Moseley B, Raschid L.  2011.  New models and algorithms for throughput maximization in broadcast scheduling. Approximation and Online Algorithms. :71-82.
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Alam M, Rashed SM, Bin Mannan S, Islam T, Lizarraga-Partida ML, Delgado G, Morales-Espinosa R, Mendez JLuis, Navarro A, Watanabe H et al..  2014.  Occurrence in Mexico, 1998–2008, of Vibrio cholerae CTX + El Tor carrying an additional truncated CTX prophage. Proceedings of the National Academy of Sciences. 111(27):9917-9922.
Steinherz T, Doermann D, Rivlin E, Intrator N.  2009.  Off-Line Loop Investigation for Handwriting Analysis. IEEETransactions on Pattern Analysis and Machine Intelligence. 31(2):193-209.

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