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Wei Z, JaJa JF.  2012.  An Optimized High-Throughput Strategy for Constructing Inverted Files. Parallel and Distributed Systems, IEEE Transactions on. PP(99):1-1.
J. Johnson I, Labich N, Might M, Van Horn D.  2013.  Optimizing Abstract Abstract Machines. arXiv:1211.3722 [cs].
Bhattacharyya SS, Eker J, Janneck JW, Lucarz C, Mattavelli M, Raulet M.  2011.  Overview of the MPEG Reconfigurable Video Coding Framework. Journal of Signal Processing Systems. 63(2):251-263.
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JaJa JF, Chang S-C.  1991.  Parallel Algorithms for Channel Routing in the Knock-Knee Model. SIAM Journal on Computing. 20(2):228-245.
Bader DA, JaJa JF, Harwood D, Davis LS.  1996.  Parallel algorithms for image enhancement and segmentation by region growing, with an experimental study. The Journal of Supercomputing. 10(2):141-168.
Bader DA, JaJa JF.  1998.  Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study. UMIACS-TR-94-133
Bader DA, JaJa JF.  1995.  Parallel algorithms for image histogramming and connected components with an experimental study (extended abstract). ACM SIGPLAN Notices. 30(8):123-133.
Helman DR, Bader DA, JaJa JF.  1996.  Parallel algorithms for personalized communication and sorting with an experimental study (extended abstract). Proceedings of the eighth annual ACM symposium on Parallel algorithms and architectures. :211-222.
JaJa JF, Kosaraju SR.  1988.  Parallel algorithms for planar graph isomorphism and related problems. Circuits and Systems, IEEE Transactions on. 35(3):304-311.
JaJa JF.  1991.  Parallel algorithms for VLSI routing. Integration, the VLSI Journal. 12(3):305-320.
JaJa JF, Shi Q, Varshney A.  2008.  Parallel Algorithms for Volumetric Surface Construction.
Chang S-C, JaJa JF.  1988.  Parallel Algorithms for Wiring Module Pins to Frame Pads.
Juba D, Cardone A, Ip C Y, Simon Jr CG, K Tison C, Kumar G, Brady M, Varshney A.  2013.  Parallel geometric classification of stem cells by their three-dimensional morphology. Computational Science & Discovery. 6(1):015007.
Helman DR, Bader DA, JaJa JF.  1998.  A Parallel Sorting Algorithm With an Experimental Study. UMIACS-TR-95-102
Juba D, Varshney A.  2008.  Parallel, stochastic measurement of molecular surface area. Journal of Molecular Graphics and Modelling. 27(1):82-87.
Myers KL, Tyson WM, Wolverton MJ, Jarvis PA, Lee TJ, desJardins M.  2002.  PASSAT: A user-centric planning framework. Proceedings of the 3rd International NASA Workshop on Planning and Scheduling for Space.
Smorul M, JaJa JF, Wang Y, McCall F.  2004.  PAWN: Producer-Archive Workflow Network in support of digital preservation. UMIACS-TR-2004:2006-2006.
Jacobs DW.  2003.  Perceptual Completion and Memory. Perceptual organization in vision: behavioral and neural perspectivesPerceptual organization in vision: behavioral and neural perspectives. :403-403.
Liu Z, Jacobs DW, Basri R.  2000.  Perceptual Completion Behind Occluders: The Role of Convexity. Perceptual Organization for Artificial Vision Systems. :73-90.
Jacobs DW.  2001.  Perceptual organization as generic object recognition. From Fragments to Objects Segmentation and Grouping in VisionFrom Fragments to Objects Segmentation and Grouping in Vision. Volume 130:295-329.
Boyer KL, Sarkar S, Feldman J, Granlund G, Horaud R, Hutchinson S, Jacobs DW, Kak A, Lowe D, Malik J.  1999.  Perceptual Organization in Computer Vision.
JaJa JF.  2000.  A perspective on Quicksort. Computing in Science Engineering. 2(1):43-49.
Basri R, Jacobs DW, Kemelmacher I.  2007.  Photometric stereo with general, unknown lighting. International Journal of Computer Vision. 72(3):239-257.
Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT et al..  2014.  Phylodynamic Analysis of Clinical and Environmental Vibrio cholerae Isolates from Haiti Reveals Diversification Driven by Positive Selection. mBio. (6)
Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT et al..  2014.  Phylodynamic Analysis of Clinical and Environmental Vibrio cholerae Isolates from Haiti Reveals Diversification Driven by Positive Selection. mBio. (6)

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