Publications

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Journal Articles
Vishnoi A, Sethupathy P, Simola D, Plotkin JB, Hannenhalli S.  2011.  Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces Paradoxus. Molecular Biology and EvolutionMol Biol Evol. 28(9):2615-2627.
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.
Lee CH, Hao X, Varshney A.  2006.  Geometry-dependent lighting. Visualization and Computer Graphics, IEEE Transactions on. 12(2):197-207.
Hao X, Varshney A.  2006.  Geometry-guided computation of 3D electrostatics for large biomolecules. Computer Aided Geometric Design. 23(6):545-557.
Pruzzo C, Vezzulli L, Colwell RR.  2008.  Global impact of Vibrio cholerae interactions with chitin. Environmental Microbiology. 10(6):1400-1410.
Gordon S, Katz J, Vaikuntanathan V.  2010.  A group signature scheme from lattice assumptions. Advances in Cryptology-ASIACRYPT 2010. :395-412.
Varshney A.  2001.  Guest Editor's Introduction: Special Issue on Visualization 2000. IEEE Transactions on Visualization and Computer Graphics. 7(3):193-194.
Chang CF, Varshney A, Ge QJ.  2001.  Haptic and aural rendering of a virtual milling process. ASME 2001 Design Engineering Technical Conference and Computers and Information in Engineering Conference, Pittsburgh, PA. :105-113.
Tobin-Hochstadt S, Van Horn D.  2011.  Higher-Order Symbolic Execution via Contracts. arXiv:1103.1362 [cs].
Schatz MC, Trapnell C, Delcher AL, Varshney A.  2007.  High-throughput sequence alignment using Graphics Processing Units. BMC Bioinformatics. 8(1):474-474.
Valancius V, Lumezanu C, Feamster N, Johari R, Vazirani VV.  2011.  How Many Tiers? Pricing in the Internet Transit Market SIGCOMM-Computer Communication Review. 41(4):194-194.
Valancius V, Lumezanu C, Feamster N, Johari R, Vazirani VV.  2011.  How Many Tiers? Pricing in the Internet Transit Market SIGCOMM-Computer Communication Review. 41(4):194-194.
Brown JR, van Dam A, Earnshaw R, Encarnacao J, Guedj R, Preece J, Shneiderman B, Vince J.  1999.  Human-centered computing, online communities, and virtual environments. IEEE Computer Graphics and Applications. 19(6):70-74.
Baras JS, Ball M, Karne RK, Kelley S, Jang KD, Plaisant C, Roussopoulos N, Stathatos K, Vakhutinsky A, Valluri J.  1996.  Hybrid network management (communication systems). 16th AIAA International Communications Satellite Systems Conference.
Baras JS, Ball M, Karne RK, Kelley S, Jang KD, Plaisant C, Roussopoulos N, Stathatos K, Vakhutinsky A, Valluri J.  1996.  Hybrid network management (communication systems). 16th AIAA International Communications Satellite Systems Conference.
Bozo-Hurtado L, García-Amado M, Chistoserdov A, Varela R, Narvaez J, Colwell RR, Suárez P.  2013.  Identification of bacteria in enrichment cultures of sulfate reducers in the Cariaco Basin water column employing Denaturing Gradient Gel Electrophoresis of 16S ribosomal RNA gene fragments. Aquatic Biosystems. 9(1):17.
Del Canto F, Botkin DJ, Valenzuela P, Popov V, Ruiz-Perez F, Nataro JP, Levine MM, Stine OC, Pop M, Torres AG et al..  2012.  Identification of Coli Surface Antigen 23, a Novel Adhesin of Enterotoxigenic Escherichia coli. Infection and immunity. 80(8):2791-2801.
Vishkin U.  2008.  An Immediate Concurrent Execution (ICE) Abstraction Proposal for Many-Cores. Computer Science Research Works.
Vishkin U.  1983.  Implementation of simultaneous memory address access in models that forbid it. Journal of algorithms. 4(1):45-50.
Hussein M, Varshney A, Davis LS.  2007.  On implementing graph cuts on cuda. First Workshop on General Purpose Processing on Graphics Processing Units.
Doermann D, Varma V, Rosenfeld A.  1994.  Instrument Grasp: AModel and its Effects on Handwritten Strokes. Pattern Recognition. 27(2):233-245.
Baras JS, Ball M, Karne RK, Kelley S, Jang KD, Plaisant C, Roussopoulos N, Stathatos K, Vakhutinsky A, Jaibharat V et al..  1996.  Integrated network management of hybrid networks. AIP Conference Proceedings. 361(1):345-350.
Earl C, Sergey I, Might M, Van Horn D.  2012.  Introspective Pushdown Analysis of Higher-Order Programs. arXiv:1207.1813 [cs].
Zhang Z, JaJa JF, Bader DA, Kalluri SNV, Song H, El Saleous N, Vermote E, Townshend JRG.  2000.  Kronos: A software system for the processing and retrieval of large-scale AVHRR data sets. PE & RS- Photogrammetric Engineering and Remote Sensing. 66(9):1073-1082.

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