Publications

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Journal Articles
Landau GM, Vishkin U.  1989.  Fast parallel and serial approximate string matching* 1. Journal of Algorithms. 10(2):157-169.
Landau GM, Vishkin U.  1988.  Fast string matching with k differences.. J. COMP. SYST. SCI.. 37(1):63-78.
Landau GM, Vishkin U.  1988.  Fast string matching with k differences* 1,* 2. Journal of Computer and System Sciences. 37(1):63-78.
Cole R, Vishkin U.  1989.  Faster optimal parallel prefix sums and list ranking. Information and Computation. 81(3):334-352.
Megiddo N, Vishkin U.  1988.  On finding a minimum dominating set in a tournament. Theoretical Computer Science. 61(2-3):307-316.
Schieber B, Vishkin U.  1990.  Finding all nearest neighbors for convex polygons in parallel: a new lower bound technique and a matching algorithm. Discrete Applied Mathematics. 29(1):97-111.
Atallah M, Vishkin U.  1984.  Finding Euler tours in parallel* 1. Journal of Computer and System Sciences. 29(3):330-337.
Berkman O, Vishkin U.  1994.  Finding level-ancestors in trees. Journal of Computer and System Sciences. 48(2):214-230.
Shiloach Y, Vishkin U.  1981.  Finding the maximum, merging, and sorting in a parallel computation model. Journal of Algorithms. 2(1):88-102.
Varna AL, He S, Swaminathan A, M. Wu.  2009.  Fingerprinting Compressed Multimedia Signals. Information Forensics and Security, IEEE Transactions on. 4(3):330-345.
Balog K, de Vries AP, Serdyukov P, Wen J-R.  2012.  The first international workshop on entity-oriented search (EOS). SIGIR Forum. 45(2):43-50.
Lu W, Varna AL, Wu M.  2010.  Forensic hash for multimedia information. SPIE Media Forensics and Security. :7541–0Y-7541–0Y.
Varna AL, Chuang WH, Wu M.  2010.  A framework for theoretical analysis of content fingerprinting. Proc. of SPIE Media Forensics and Security.
Tobin-Hochstadt S, Van Horn D.  2013.  From Principles to Practice with Class in the First Year. arXiv:1306.4713 [cs].
Turaga PK, Veeraraghavan A, Chellappa R.  2008.  From Videos to Verbs: Mining Videos for Activities using a cascade of dynamical systems (Supplemental Material). Relation. 10(1.13):9944-9944.
El‐Sana J, Varshney A.  1999.  Generalized View‐Dependent Simplification. Computer Graphics Forum. 18(3):83-94.
Clayton C, Adams M, Almeida R, Baltz T, Barrett M, Bastien P, Belli S, Beverley S, Biteau N, Blackwell J et al..  1998.  Genetic nomenclature for Trypanosoma and Leishmania.. Mol Biochem Parasitol. 97(1-2):221-4.
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):512-519.
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):512-519.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science. 309(5733):409-415.
Lewinski MK, Bisgrove D, Shinn P, Chen H, Hoffmann C, Hannenhalli S, Verdin E, Berry CC, Ecker JR, Bushman FD.  2005.  Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription. Journal of VirologyJ. Virol.. 79(11):6610-6619.
Yang S, Wang K, Valladares O, Hannenhalli S, Bucan M.  2007.  Genome-wide expression profiling and bioinformatics analysis of diurnally regulated genes in the mouse prefrontal cortex. Genome Biology. 8(11):R247-R247.

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