Publications

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Lee CH, Hao X, Varshney A.  2006.  Geometry-dependent lighting. Visualization and Computer Graphics, IEEE Transactions on. 12(2):197-207.
Freedman MJ, Vutukuru M, Feamster N, Balakrishnan H.  2005.  Geographic locality of IP prefixes. Proceedings of the 5th ACM SIGCOMM conference on Internet Measurement. :13-13.
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.
Vishnoi A, Sethupathy P, Simola D, Plotkin JB, Hannenhalli S.  2011.  Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces Paradoxus. Molecular Biology and EvolutionMol Biol Evol. 28(9):2615-2627.
Yang S, Wang K, Valladares O, Hannenhalli S, Bucan M.  2007.  Genome-wide expression profiling and bioinformatics analysis of diurnally regulated genes in the mouse prefrontal cortex. Genome Biology. 8(11):R247-R247.
Lewinski MK, Bisgrove D, Shinn P, Chen H, Hoffmann C, Hannenhalli S, Verdin E, Berry CC, Ecker JR, Bushman FD.  2005.  Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription. Journal of VirologyJ. Virol.. 79(11):6610-6619.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science. 309(5733):409-415.
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):512-519.
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):512-519.
Clayton C, Adams M, Almeida R, Baltz T, Barrett M, Bastien P, Belli S, Beverley S, Biteau N, Blackwell J et al..  1998.  Genetic nomenclature for Trypanosoma and Leishmania.. Mol Biochem Parasitol. 97(1-2):221-4.
Varshney A, Agarwal PK, Brooks Jr FP, Wright WV, Weber H.  1995.  Generating levels of detail for large-scale polygonal models. CS-1995-20
Caragea GC, Keceli F, Tzannes A, Vishkin U.  2010.  General-purpose vs. gpu: Comparison of many-cores on irregular workloads. Proceedings of the Second Usenix Workshop on Hot Topics in Parallelism. :14-15.
El‐Sana J, Varshney A.  1999.  Generalized View‐Dependent Simplification. Computer Graphics Forum. 18(3):83-94.
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Veeraraghavan A, Chellappa R, Roy-Chowdhury AK.  2006.  The Function Space of an Activity. Computer Vision and Pattern Recognition, 2006 IEEE Computer Society Conference on. 1:959-968.
Turaga PK, Veeraraghavan A, Chellappa R.  2008.  From Videos to Verbs: Mining Videos for Activities using a cascade of dynamical systems (Supplemental Material). Relation. 10(1.13):9944-9944.
Turaga PK, Veeraraghavan A, Chellappa R.  2007.  From Videos to Verbs: Mining Videos for Activities using a Cascade of Dynamical Systems. Computer Vision and Pattern Recognition, 2007. CVPR '07. IEEE Conference on. :1-8.
Rotman D, Vieweg S, Yardi S, Chi E, Preece J, Shneiderman B, Pirolli P, Glaisyer T.  2011.  From slacktivism to activism: participatory culture in the age of social media. Proceedings of the 2011 annual conference extended abstracts on Human factors in computing systems. :819-822.
Tobin-Hochstadt S, Van Horn D.  2013.  From Principles to Practice with Class in the First Year. arXiv:1306.4713 [cs].
Vishkin U.  1997.  From algorithm parallelism to instruction-level parallelism: An encode-decode chain using prefix-sum. Proceedings of the ninth annual ACM symposium on Parallel algorithms and architectures. :260-271.
Varna AL, Chuang WH, Wu M.  2010.  A framework for theoretical analysis of content fingerprinting. Proc. of SPIE Media Forensics and Security.
Wen X, Vishkin U.  2008.  Fpga-based prototype of a pram-on-chip processor. Proceedings of the 5th conference on Computing frontiers. :55-66.

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