Publications

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Journal Articles
Hannenhalli S, Feldman W, Lewis HF, Skiena SS, Pevzner PA.  1996.  Positional sequencing by hybridization. Computer applications in the biosciences : CABIOS. 12(1):19-24.
Vardhanabhuti S, Wang J, Hannenhalli S.  2007.  Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation. Nucleic Acids Research. 35(10):3203-3213.
Hannenhalli S.  1996.  Polynomial-time algorithm for computing translocation distance between genomes. Discrete Applied Mathematics. 71(1–3):137-151.
Espeland EM, Lipp EK, Huq A, Colwell RR.  2004.  Polylysogeny and prophage induction by secondary infection in Vibrio cholerae. Environmental Microbiology. 6(7):760-763.
Hicks MW, Kakkar P, Moore JT, Gunter CA, Alexander DS, Nettles S.  1998.  The PLAN system for building Active Networks. University of Pennsylvania (February 27, 1998).
Hicks MW.  1999.  PLAN Service Programmer's Guide for PLAN version 3.2. University of Pennsylvania.
Hicks MW.  1998.  PLAN Service Programmer's Guide. University of Pennsylvania.
Hicks MW, Kakkar P, Moore JT, Gunter CA, Nettles S.  1999.  PLAN: A programming language for active networks. ACM SIGPLAN NOTICES. 34:86-93.
Hicks MW, Kakkar P, Moore JT, Gunter CA, Nettles S.  1998.  PLAN: a packet language for active networks. SIGPLAN Not.. 34(1):86-93.
Hochstein L, Basili VR, Vishkin U, Gilbert J.  2008.  A pilot study to compare programming effort for two parallel programming models. Journal of Systems and Software. 81(11):1920-1930.
Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura F-T, Eppinger M, Ravel J, Huq A et al..  2016.  Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008. mBio. 7(2)
Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura F-T, Eppinger M, Ravel J, Huq A et al..  2016.  Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008. mBio. 7(2)
Caceres A, Shang F, Wawrousek E, Liu Q, Avidan O, Cvekl A, Yang Y, Haririnia A, Storaska A, Fushman D et al..  2010.  Perturbing the Ubiquitin Pathway Reveals How Mitosis Is Hijacked to Denucleate and Regulate Cell Proliferation and Differentiation In Vivo. PLoS ONEPLoS ONE. 5(10):e13331-e13331.
Chalidabhongse TH, Kim K, Harwood D, Davis LS.  2003.  A perturbation method for evaluating background subtraction algorithms. Joint IEEE International Workshop on Visual Surveillance and Performance Evaluation of Tracking and Surveillance (VS-PETS).
He S, Wu M.  2005.  Performance study on multimedia fingerprinting employing traceability codes. Digital Watermarking. :84-96.
He S, Wu M.  2004.  Performance study of ECC-based collusion-resistant multimedia fingerprinting. Proceedings of the 38th CISS. :827-832.
Hochheiser H, Shneiderman B.  2000.  Performance Benefits of Simultaneous Over Sequential Menus as Task Complexity Increases. International Journal of Human-Computer Interaction. 12(2):173-192.
Hussein M, Porikli F, Davis LS.  2009.  PERCEPTION AND NAVIGATION FOR AUTONOMOUS VEHICLES. IEEE Transactions on intelligent transportation systems. 10(3):417-427.
Kim K, Chalidabhongse TH, Harwood D, Davis LS.  2006.  PDR: A Performance Evaluation Method for Foreground-Background Segmentation Algorithms. EURASIP Journal on Applied Signal Processing.
Hadley D, Murphy T, Valladares O, Hannenhalli S, Ungar L, Kim J, Bućan M.  2006.  Patterns of sequence conservation in presynaptic neural genes. Genome Biology. 7(11):R105-R105.
Hadley D, Murphy T, Valladares O, Hannenhalli S, Ungar L, Kim J, Bućan M.  2006.  Patterns of sequence conservation in presynaptic neural genes. Genome Biology. 7(11):R105-R105.
Pruzzo C, Huq A, Colwell RR, Donelli G.  2005.  Pathogenic Vibrio species in the marine and estuarine environment. Oceans and health: pathogens in the marine environment. :217-252.
Ruppin E, Reggia JA, Horn D.  1996.  Pathogenesis of schizophrenic delusions and hallucinations: a neural model. Schizophrenia bulletin. 22(1):105-105.
Papageorge P, McCann J, Hicks MW.  2009.  Passive aggressive measurement with MGRP. SIGCOMM Comput. Commun. Rev.. 39(4):279-290.
Rambow O, Dorr BJ, Farwell D, Green R, Habash N, Helmreich S, Hovy E, Levin L, Miller KJ, Mitamura T et al..  2006.  Parallel syntactic annotation of multiple languages. Proceedings of the Fifth International Conference on Language Resources and Evaluation (LREC2006). Genoa, Italy.

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