Publications

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Journal Articles
Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB, Delcher AL, Pop M, Wang W, Fraser CM et al..  2003.  The Dog Genome: Survey Sequencing and Comparative Analysis. ScienceScience. 301(5641):1898-1903.
Ge QJ, Varshney A, Menon JP, Chang CF.  1998.  Double quaternions for motion interpolation. Proceedings of the ASME Design Engineering Technical Conference.
Vezzulli L, Guzmán CA, Colwell RR, Pruzzo C.  2008.  Dual role colonization factors connecting Vibrio cholerae's lifestyles in human and aquatic environments open new perspectives for combating infectious diseases. Current Opinion in Biotechnology. 19(3):254-259.
Vishkin U, Wigderson A.  1983.  Dynamic parallel memories. Information and control. 56(3):174-182.
Dickinson BC, Varadan R, Fushman D.  2007.  Effects of cyclization on conformational dynamics and binding properties of Lys48-linked di-ubiquitin. Protein Science. 16(3):369-378.
Wang Q, JaJa JF, Varshney A.  2007.  An efficient and scalable parallel algorithm for out-of-core isosurface extraction and rendering. Journal of Parallel and Distributed Computing. 67(5):592-603.
Ryabov YE, Geraghty C, Varshney A, Fushman D.  2006.  An Efficient Computational Method for Predicting Rotational Diffusion Tensors of Globular Proteins Using an Ellipsoid Representation. Journal of the American Chemical Society. 128(48):15432-15444.
Vishkin U.  1983.  Efficient distributed orientation algorithm.. IEEE TRANS. INFO. THEORY.. 29(4):624-628.
Perl Y, Vishkin U.  1985.  Efficient implementation of a shifting algorithm. Discrete applied mathematics. 12(1):71-80.
Landau GM, Vishkin U.  1986.  Efficient Parallel and Serial String Matching. Computer Science Department Technical Report. 221
Tarjan RE, Vishkin U.  1985.  An efficient parallel biconnectivity algorithm. SIAM Journal on Computing. 14:862-862.
Vishkin U.  1985.  On efficient parallel strong orientation. Information Processing Letters. 20(5):235-240.
Amir A, Landau GM, Vishkin U.  1992.  Efficient pattern matching with scaling. Journal of Algorithms. 13(1):2-32.
Hao X, Varshney A.  2004.  Efficient solution of poisson-boltzmann equation for electrostatics of large molecules. High-Performance Computing Symposium (April 2004). :71-76.
Landau GM, Vishkin U, Nussinov R.  1986.  An efficient string matching algorithm with k differences for nudeotide and amino acid sequences. Nucleic acids research. 14(1):31-31.
Landau GM, Vishkin U, Nussinov R.  1987.  An efficient string matching algorithm with K substitutions for nucleotide and amino acid sequences*. Journal of theoretical biology. 126(4):483-490.
Landau GM, Vishkin U.  1986.  Efficient string matching with k mismatches. Theoretical Computer Science. 43:239-249.
Evans F, Skiena S, Varshney A.  1997.  Efficient triangle strips for fast rendering. ACM Transactions on Graphics.
El-Sana J, Evans F, Kalaiah A, Varshney A, Skiena S, Azanli E.  2000.  Efficiently computing and updating triangle strips for real-time rendering. Computer Aided Design. 32(13):753-772.
Peckerar M, Sander D, Srivastava A, Foli A, Vishkin U.  2007.  Electron beam and optical proximity effect reduction for nanolithography: New results. Journal of Vacuum Science & Technology B. 25(6):2288-2294.
Lu W, Swaminathan A, Varna AL, Wu M.  2009.  Enabling search over encrypted multimedia databases. SPIE/IS&T Media Forensics and Security. :7254-18.
Varshney A, El-Sana J, Evans F, Darsa L, Costa B, Skiena S.  1997.  Enabling virtual reality for large-scale mechanical CAD datasets. Proceedings of ASME Design Engineering Technical Conferences, Sept. 14:17-17.
Varshney A, Prins JF.  1992.  An environment projection approach to radiosity for meshconnected computers. Third Eurographics Workshop on Rendering. :271-281.
Vezzulli L, Pruzzo C, Huq A, Colwell RR.  2010.  Environmental reservoirs of Vibrio cholerae and their role in cholera. Environmental Microbiology Reports. 2(1):27-33.
O'Leary DP, Stewart G.W, Vandergraft JS.  1979.  Estimating the Largest Eigenvalue of a Positive Definite Matrix. Mathematics of Computation. 33:1289-1292.

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