Publications

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Berthier R, Cukier M.  2008.  The Deployment of a Darknet on an Organization-Wide Network: An Empirical Analysis. :59-68.
Berthier R, Korman D, Cukier M, Hiltunen M, Vesonder G, Sheleheda D.  2008.  On the Comparison of Network Attack Datasets: An Empirical Analysis. :39-48.
Berthier R, Arjona J, Cukier M.  2009.  Analyzing the process of installing rogue software. :560-565.
Berthier R, Cukier M.  2009.  An evaluation of connection characteristics for separating network attacks. International Journal of Security and Networks. 4(1):110-124.
Berthier R, Cukier M, Hiltunen M, Kormann D, Vesonder G, Sheleheda D.  2010.  Nfsight: netflow-based network awareness tool.
Berry C, Hannenhalli S, Leipzig J, Bushman FD.  2006.  Selection of Target Sites for Mobile DNA Integration in the Human Genome. PLoS Comput BiolPLoS Comput Biol. 2(11):e157-e157.
Berry MW, Pulatova SA, Stewart G.W.  2005.  Algorithm 844: Computing sparse reduced-rank approximations to sparse matrices. ACM Transactions on Mathematical Software-TOMS. 31(2):252-269.
Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, Bartholomeu DC, Lennard NJ, Caler E, Hamlin NE, Haas B et al..  2005.  The genome of the African trypanosome Trypanosoma brucei. Science. 309(5733):416-416.
Bernstein LB, Mount SM, Weiner AM.  1983.  Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites. CellCell. 32(2):461-472.
Bernardo M, Cleaveland R.  1999.  A Theory of Efficiency for Markovian Processes. University of Bologna.
Berman P, Hannenhalli S, Karpinski M.  2002.  1.375-Approximation Algorithm for Sorting by Reversals. Algorithms — ESA 2002Algorithms — ESA 2002. 2461:401-408.
Berman P, Hannenhalli S.  1996.  Fast sorting by reversal. Combinatorial Pattern MatchingCombinatorial Pattern Matching. 1075:168-185.
Berlin K, O’Leary DP, Fushman D.  2010.  Structural Assembly of Molecular Complexes Based on Residual Dipolar Couplings. J. Am. Chem. Soc.. 132(26):8961-8972.
Berlin K, O’Leary DP, Fushman D.  2009.  Improvement and analysis of computational methods for prediction of residual dipolar couplings. Journal of Magnetic Resonance. 201(1):25-33.
Berlin K, O'Leary DP, Fushman D.  2011.  Fast approximations of the rotational diffusion tensor and their application to structural assembly of molecular complexes. Proteins: Structure, Function, and Bioinformatics. 79(7):2268-2281.
Berland M, Rand W.  2009.  Participatory simulation as a tool for agent-based simulation. Proceedings of the International Conference on Agents and Artificial Intelligence (ICAART-09).
Berkovich E, Nuzman J, Franklin M, Jacob B, Vishkin U.  1999.  XMT-M: A Scalable Decentralized Processor. UMIACS-TR-99-55
Berkovich E, Jacob B, Nuzman J, Vishkin U.  1998.  Looking to Parallel Algorithms for ILP and Decentralization. CS-TR-3921
Berkman O, Vishkin U.  1994.  Finding level-ancestors in trees. Journal of Computer and System Sciences. 48(2):214-230.
Berkman O, Vishkin U.  1995.  Almost fully-parallel parentheses matching. Discrete applied mathematics. 57(1):11-28.
Berkman O, Matias Y, Vishkin U.  1992.  Randomized range-maxima in nearly-constant parallel time. Computational Complexity. 2(4):350-373.
Berkman O, JaJa JF, Krishnamurthy S, Thurimella R, Vishkin U.  1994.  Top-Bottom Routing around a Rectangle is as Easy as Computing Prefix Minima. SIAM Journal on Computing. 23(3):449-465.
Berkman O, Schieber B, Vishkin U.  1996.  A fast parallel algorithm for finding the convex hull of a sorted point set. International Journal of Computational Geometry and Applications. 6:231-242.
Berkman O, Schieber B, Vishkin U.  1993.  Optimal doubly logarithmic parallel algorithms based on finding all nearest smaller values. Journal of Algorithms. 14(3):344-370.
Berkman O, Vishkin U.  1993.  On parallel integer merging. Information and Computation. 106(2):266-285.

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