Publications

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2013
Clements JD, Connell ND, Dirks C, El-Faham M, Hay A, Heitman E, Stith JH, Bond EC, Colwell RR, Anestidou L et al..  2013.  Engaging Actively with Issues in the Responsible Conduct of Science: Lessons from International Efforts Are Relevant for Undergraduate Education in the United States. CBE—Life Sciences Education. (4):596-603.
Hara K, Le V, Sun J, Jacobs D, Froehlich J.  2013.  Exploring Early Solutions for Automatically Identifying Inaccessible Sidewalks in the Physical World Using Google Street View. HCIC 2013.
Hara K, Azenkot S, Campbell M, Bennett CL, Le V, Pannella S, Moore R, Minckler K, Ng RH, Froehlich J.  2013.  Improving public transit accessibility for blind riders by crowdsourcing bus stop landmark locations with Google street view. The 15th International ACM SIGACCESS Conference. :16-8.
Ceccarelli D, Spagnoletti M, Hasan NA, Lansing S, Huq A, Colwell RR.  2013.  A new integrative conjugative element detected in Haitian isolates of Vibrio cholerae non-O1/non-O139. Research in Microbiology. 164(9):891-893.
J. Johnson I, Labich N, Might M, Van Horn D.  2013.  Optimizing Abstract Abstract Machines. arXiv:1211.3722 [cs].
Li I, Froehlich J, Larsen JE, Grevet C, Ramirez E.  2013.  Personal informatics in the wild: hacking habits for health & happiness. CHI '13 Extended Abstracts on Human Factors in Computing Systems. :3179-3182.
Li I, Froehlich J, Larsen JE, Grevet C, Ramirez E.  2013.  Personal informatics in the wild: hacking habits for health & happiness. CHI '13 Extended Abstracts on Human Factors in Computing Systems. :3179-3182.
Cantet F, Hervio-Heath D, Caro A, Le Mennec C, Monteil C, Quéméré C, Jolivet-Gougeon A, Colwell RR, Monfort P.  2013.  Quantification of Vibrio parahaemolyticus, Vibrio vulnificus and Vibrio cholerae in French Mediterranean coastal lagoons. Research in Microbiology. 164(8):867-874.
Li-Baboud Y-S, Cardone A, Chalfoun J, Bajcsy P, Elliott J.  2013.  Understanding the impact of image quality on segmentation accuracy. SPIE Newsroom.
Bitansky N, Dachman-Soled D, Garg S, Jain A, Kalai YTauman, López-Alt A, Wichs D.  2013.  Why “Fiat-Shamir for Proofs” Lacks a Proof. Theory of Cryptography. :182-201.
2012
Lin HC, Goldstein S, Mendelowitz L, Zhou S, Wetzel J, Schwartz DC, Pop M.  2012.  AGORA: Assembly Guided by Optical Restriction Alignment. BMC bioinformatics. 13(1)
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O’Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP et al..  2012.  BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst Biol. 61(1):170-173.
Lumezanu C, Feamster N, Klein H.  2012.  #bias: Measuring the Tweeting Behavior of Propagandists. Sixth International AAAI Conference on Weblogs and Social Media.
Cardone A, Amelot J, Li-Baboud Y-S, Brady M, Bajcsy P.  2012.  Biases from model assumptions in texture sub-cellular image segmentation. SPIE Newsroom. 13
Zhuolin Jiang, Lin Z, Davis LS.  2012.  Class consistent k-means: Application to face and action recognition. Computer Vision and Image Understanding. 116(6):730-741.
Nikolova S, Boyd-Graber J, Fellbaum C.  2012.  Collecting Semantic Similarity Ratings to Connect Concepts in Assistive Communication Tools. Modeling, Learning, and Processing of Text Technological Data StructuresModeling, Learning, and Processing of Text Technological Data Structures. 370:81-93.
Nikolova S, Boyd-Graber J, Fellbaum C.  2012.  Collecting Semantic Similarity Ratings to Connect Concepts in Assistive Communication Tools. Modeling, Learning, and Processing of Text Technological Data StructuresModeling, Learning, and Processing of Text Technological Data Structures. 370:81-93.
Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S.  2012.  Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease. PloS one. 7(6)
Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S.  2012.  Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease. PloS one. 7(6)
Froehlich J, Findlater L, Ostergren M, Ramanathan S, Peterson J, Wragg I, Larson E, Fu F, Bai M, Patel S.  2012.  The design and evaluation of prototype eco-feedback displays for fixture-level water usage data. :2367-2376.
Larson E, Froehlich J, Campbell T, Haggerty C, Atlas L, Fogarty J, Patel SN.  2012.  Disaggregated water sensing from a single, pressure-based sensor: An extended analysis of HydroSense using staged experiments. Pervasive and Mobile Computing. 8(1):82-102.
Rotman D, Preece J, Hammock J, Procita K, Hansen D, Parr C, Lewis D, Jacobs DW.  2012.  Dynamic changes in motivation in collaborative citizen-science projects. Proceedings of the ACM 2012 conference on Computer Supported Cooperative Work. :217-226.
Johnson CN, Bowers JC, Griffitt KJ, Molina V, Clostio RW, Pei S, Laws E, Paranjpye RN, Strom MS, Chen A et al..  2012.  Ecology of Vibrio parahaemolyticus and Vibrio vulnificus in the Coastal and Estuarine Waters of Louisiana, Maryland, Mississippi, and Washington (United States). Applied and Environmental Microbiology. (20):7249-7257.
Goodrich MT, Papamanthou C, Nguyen D, Tamassia R, Lopes CVideira, Ohrimenko O, Triandopoulos N.  2012.  Efficient Verification of Web-content Searching Through Authenticated Web Crawlers. Proc. VLDB Endow.. 5(10):920-931.

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