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Dunlavy DM, O'Leary DP, Klimov D, Thirumalai D.  2005.  HOPE: A Homotopy Optimization Method for Protein Structure Prediction. Journal of Computational Biology. 12(10):1275-1288.
Dunlavy DM, Conroy JM, O'Leary TJ, O'Leary DP.  2003.  Clustering and Summarizing Medline Abstracts. BISTI 2003 Symposium on Digital Biology: The Emerging ParadigmBISTI 2003 Symposium on Digital Biology: The Emerging Paradigm.
Dunlavy DM, O’Leary DP, Conroy JM, Schlesinger JD.  2007.  QCS: A system for querying, clustering and summarizing documents. Information Processing & Management. 43(6):1588-1605.
Dumitras T, Kerner S, M\uarculescu R.  2003.  Towards On-chip Fault-tolerant Communication. ASP-DAC '03 Proceedings of the 2003 Asia and South Pacific Design Automation Conference. :225-232.
Dumitras T.  2009.  Dependable, Online Upgrades in Enterprise Systems. OOPSLA'09 Proceedings of the 24th ACM SIGPLAN Conference Companion on Object Oriented Programming Systems Languages and Applications. :743-744.
Dumitras T, Neamtiu I, Tilevich E.  2009.  Second ACM Workshop on Hot Topics in Software Upgrades (HotSWUp 2009). :705-706.
Dumitras T, Dig D, Neamtiu I.  2008.  1st ACM workshop on hot topics in software upgrades (HotSWUp 2008). OOPSLA Companion'08 Companion to the 23rd ACM SIGPLAN Conference on Object-Oriented Programming Systems Languages and Applications. :837-838.
Dumitras T, Narasimhan P.  2005.  Fault-Tolerant Middleware and the Magical 1%. Middleware 2005. :431-441.
Dumitras T, Narasimhan P.  2009.  Toward Upgrades-as-a-service in Distributed Systems. Middleware'09 Proceedings of the 10th ACM/IFIP/USENIX International Conference on Middleware. :29:1-29:2.
Dumitras T, Efstathopoulos P.  2012.  Ask WINE: Are We Safer Today? Evaluating Operating System Security Through Big Data Analysis LEET'12 Proceedings of the 5th USENIX conference on Large-Scale Exploits and Emergent Threats. :11-11.
Dumitras T, Marculescu R..  2003.  On-chip stochastic communication [SoC applications]. Design, Automation and Test in Europe Conference and Exhibition, 2003. :790-795.
Dumitras T, Lee M., Quinones P., Smailagic A., Siewiorek D, Narasimhan P..  2006.  Eye of the Beholder: Phone-Based Text-Recognition for the Visually-Impaired. 2006 10th IEEE International Symposium on Wearable Computers. :145-146.
Dumitras T, Shou D.  2011.  Toward a Standard Benchmark for Computer Security Research: The Worldwide Intelligence Network Environment (WINE). BADGERS '11 Proceedings of the First Workshop on Building Analysis Datasets and Gathering Experience Returns for Security. :89-96.
Dumitras T, Srivastava D, Narasimhan P.  2005.  Architecting and Implementing Versatile Dependability. Architecting Dependable Systems III. :212-231.
Dumitras T, Narasimhan P.  2009.  No Downtime for Data Conversions: Rethinking Hot Upgrades (CMU-PDL-09-106). Parallel Data Laboratory.
Dumitras T, Kerner S, Marculescu R.  2004.  Enabling On-chip Diversity Through Architectural Communication Design. ASP-DAC '04 Proceedings of the 2004 Asia and South Pacific Design Automation Conference. :799-805.
Dumitras T, Narasimhan P, Tilevich E.  2010.  To Upgrade or Not to Upgrade: Impact of Online Upgrades Across Multiple Administrative Domains. OOPSLA'10 Proceedings of the ACM International Conference on Object Oriented Programming Systems Languages and Applications. :865-876.
Dumitras T, Narasimhan P.  2013.  A study of unpredictability in fault-tolerant middleware. Computer Networks. 57(3):682-698.
Dumitras T.  2010.  Improving the Dependability of Distributed Systems Through Air Software Upgrades.
Dumitras T, Narasimhan P.  2009.  Why Do Upgrades Fail and What Can We Do About It?: Toward Dependable, Online Upgrades in Enterprise System Middleware'09 Proceedings of the 10th ACM/IFIP/USENIX International Conference on Middleware. :18:1-18:20.
Dumitras T, Roşu D, Dan A, Narasimhan P.  2007.  Ecotopia: An Ecological Framework for Change Management in Distributed Systems. Architecting Dependable Systems IV. :262-286.
Dumitras T, Efstathopoulos P..  2012.  The Provenance of WINE. Dependable Computing Conference (EDCC), 2012 Ninth European. :126-131.
Dumitras T, Kavulya S, Narasimhan P.  2008.  A Fault Model for Upgrades in Distributed Systems (CMU-PDL-08-115). Parallel Data Laboratory.
Dumitras T, Narasimhan P.  2007.  Got Predictability?: Experiences with Fault-tolerant Middleware MC'07 Proceedings of the 2007 ACM/IFIP/USENIX International Conference on Middleware Companion. :20:1-20:22.
Dumais S, Banko M, Brill E, Jimmy Lin, Ng A.  2002.  Web question answering: is more always better? Proceedings of the 25th annual international ACM SIGIR conference on Research and development in information retrieval. :291-298.

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