Nguyen T, Hu Y, Boyd-Graber J.  Submitted.  Evaluating Regularized Anchor Words. mimno.infosci.cornell.edu. 

Hu Y, Zhai K, Edelman V, Boyd-Graber J.  Submitted.  Topic Models for Translation Domain Adaptation. mimno.infosci.cornell.edu. 

Al-Hebshi NNoor, Baraniya D, Chen T, Hill J, Puri S, Tellez M, Hassan NA, Colwell RR, Ismail A.  2019.  Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children. Journal of Oral Microbiology. (118):1557986.

Sultana M, Nusrin S, Hasan NA, Sadique A, Ahmed KU, Islam A, Hossain A, Longini I, Nizam A, Huq A et al..  2018.  Biofilms Comprise a Component of the Annual Cycle of Vibrio cholerae in the Bay of Bengal Estuary. mBio. (2):e00483-18.

Stamps BW, Leddy MB, Plumlee MH, Hasan NA, Colwell RR, Spear JR.  2018.  Characterization of the Microbiome at the World?s Largest Potable Water Reuse Facility. Frontiers in Microbiology. 

Hourigan SK, Subramanian P, Hasan NA, Ta A, Klein E, Chettout N, Huddleston K, Deopujari V, Levy S, Baveja R et al..  2018.  Comparison of Infant Gut and Skin Microbiota, Resistome and Virulome Between Neonatal Intensive Care Unit (NICU) Environments. Frontiers in Microbiology. 

Connelly S, Subramanian P, Hasan NA, Colwell RR, Kaleko M.  2018.  Distinct consequences of amoxicillin and ertapenem exposure in the porcine gut microbiome. Anaerobe. 53:82-93.

Neogi S, Rubin L, Alam M, Harder J, Yamasaki S, Colwell RR.  2018.  Environmental and hydroclimatic factors influencing Vibrio populations in the estuarine zone of the Bengal delta. Environmental Monitoring and Assessment. (10)

Leddy MB, Plumlee MH, Kantor RS, Nelson KL, Miller SE, Kennedy LC, Stamps BW, Spear JR, Hasan NA, Colwell RR.  2018.  High-Throughput DNA Sequencing To Profile Microbial Water Quality Of Potable Reuse. 

Roy M, Arnaud J, Jasmin P, Hamner S, Hasan N, Colwell RR, Ford T.  2018.  A Metagenomic Approach to Evaluating Surface Water Quality in Haiti. International Journal of Environmental Research and Public Health. 1542(10):2211.

Akanda A, Aziz S, Jutla A, Huq A, Alam M, Ahsan G, Colwell RR.  2018.  Satellites and Cell Phones Form a Cholera Early-Warning System. Eos. 99

Hossain M, Alam M, Khaleque A, Islam S, Sadique A, Khan N, Halim Z, Sarker M, El-Sayed NM, Huq A et al..  2018.  Virulence-Related Genes Identified from the Genome Sequence of the Non-O1/Non-O139 Vibrio cholerae Strain VcN1, Isolated from Dhaka, Bangladesh. Genome Announcements. (10)

Briquaire R, Colwell RR, Boncy J, Rossignol E, Dardy A, Pandini I, Villeval F, Machuron J-L, Huq A, Rashed S et al..  2017.  Application of a paper based device containing a new culture medium to detect Vibrio cholerae  in water samples collected in Haiti. Journal of Microbiological Methods. 133:23-31.

Huq A, Anwar R, Colwell RR, McDonald MD, Khan R, Jutla A, Akanda S.  2017.  Assessment of Risk of Cholera in Haiti following Hurricane Matthew. The American Journal of Tropical Medicine and Hygiene. 97(3):896-903.

Leddy MB, Hasan NA, Subramanian P, Heberling C, Cotruvo J, Colwell RR.  2017.  Characterization of Microbial Signatures From Advanced Treated Wastewater Biofilms. Journal - American Water Works Association. 109:E503-E512.

Chen AJ, Hasan NA, Haley BJ, Taviani E, Tarnowski M, Brohawn K, Johnson CN, Colwell RR, Huq A.  2017.  Characterization of Pathogenic Vibrio parahaemolyticus from the Chesapeake Bay, Maryland. Frontiers in Microbiology. 

Ceccarelli D, Garriss G, Choi SY, Hasan NA, Stepanauskas R, Pop M, Huq A, Colwell RR.  2017.  Characterization of Two Cryptic Plasmids Isolated in Haiti from Clinical Vibrio cholerae Non-O1/Non-O139. Frontiers in Microbiology. 

Khajanchi BK, Hasan NA, Choi SYoung, Han J, Zhao S, Colwell RR, Cerniglia CE, Foley SL.  2017.  Comparative genomic analysis and characterization of incompatibility group FIB plasmid encoded virulence factors of Salmonella enterica isolated from food sources. BMC Genomics. 

Ranjan A, Shaik S, Nandanwar N, Hussain A, Tiwari SK, Semmler T, Jadhav S, Wieler LH, Alam M, Colwell RR et al..  2017.  Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections. mBio. (4)

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S et al..  2017.  Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Genome Biology. (1210)

Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S et al..  2017.  Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). Journal of Biomolecular Techniques : JBT. 28(1):31-39.

Nasr-Azadani F, Khan R, Rahimikollu J, Unnikrishnan A, Akanda A, Alam M, Huq A, Jutla A, Colwell RR.  2017.  Hydroclimatic sustainability assessment of changing climate on cholera in the Ganges-Brahmaputra basin. Advances in Water Resources. 108:332-344.

Rashed SM, Hasan NA, Alam M, Sadique A, Sultana M, Hoq M.Mozammel, R. Sack B, Colwell RR, Huq A.  2017.  Vibrio cholerae O1 with Reduced Susceptibility to Ciprofloxacin and Azithromycin Isolated from a Rural Coastal Area of Bangladesh. Frontiers in Microbiology. 

Jumat M, Hasan N, Subramanian P, Heberling C, Colwell RR, Hong P-Y.  2017.  Membrane Bioreactor-Based Wastewater Treatment Plant in Saudi Arabia: Reduction of Viral Diversity, Load, and Infectious Capacity. Water. 96046Volume 70(7):534.

Junqueira AC, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE et al..  2017.  The microbiomes of blowflies and houseflies as bacterial transmission reservoirs. Scientific Reports. (1)

Connelly S., Bristol J.A., Hubert S., Subramanian P., Hasan N.A., Colwell RR, Kaleko M..  2017.  SYN-004 (ribaxamase), an oral beta-lactamase, mitigates antibiotic-mediated dysbiosis in a porcine gut microbiome model. Journal of Applied Microbiology. (1Suppl 11):66-79.

Rashid M-ur, Almeida M, Azman AS, Lindsay BR, Sack DA, Colwell RR, Huq A, J. Morris G, Alam M, O. Stine C.  2016.  Comparison of inferred relatedness based on multilocus variable-number tandem-repeat analysis and whole genome sequencing of Vibrio cholerae               O1. FEMS Microbiology Letters. 36389(12):fnw116.

Cardone A, Brady M, Sriram R., Pant H.C, Hassan S.A.  2016.  Computational study of the inhibitory mechanism of the kinase CDK5 hyperactivity by peptide p5 and derivation of a pharmacophore. Journal of Computer-Aided Molecular Design. 30(6):513-521.

Ponnusamy D, Kozlova EV, Sha J, Erova TE, Azar SR, Fitts EC, Kirtley ML, Tiner BL, Andersson JA, Grim CJ et al..  2016.  Cross-talk among flesh-eating Aeromonas hydrophila strains in mixed infection leading to necrotizing fasciitis. Proceedings of the National Academy of Sciences. 11312161268(3321029):722-727.

Ottesen A, Ramachandran P, Reed E, White JR, Hasan N, Subramanian P, Ryan G, Jarvis K, Grim C, Daquiqan N et al..  2016.  Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak. BMC Microbiology. 

Motesharrei S, Rivas J, Kalnay E, Asrar GR, Busalacchi AJ, Cahalan RF, Cane MA, Colwell RR, Feng K, Franklin RS et al..  2016.  Modeling Sustainability: Population, Inequality, Consumption, and Bidirectional Coupling of the Earth and Human Systems. National Science Review. :nww081.

Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura F-T, Eppinger M, Ravel J, Huq A et al..  2016.  Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008. mBio. 7(2)

Ceccarelli D, Alam M, Huq A, Colwell RR.  2016.  Reduced Susceptibility to Extended-Spectrum ?-Lactams in Vibrio cholerae Isolated in Bangladesh. Frontiers in Public Health. 

Bartholomew JC, Pearson AD, Stenseth NC, LeDuc JW, Hirschberg DL, Colwell RR.  2015.  Building Infectious Disease Research Programs to Promote Security and Enhance Collaborations with Countries of the Former Soviet Union. Frontiers in Public Health. 35361632

Castro-Nallar E, Hasan NA, Cebula TA, Colwell RR, Robison RA, W. Johnson E, Crandall KA.  2015.  Concordance and discordance of sequence survey methods for molecular epidemiology. PeerJ. (8105394):e761.

Hasan NA, Grim CJ, Lipp EK, Rivera ING, Chun J, Haley BJ, Taviani E, Choi SYoung, Hoq M, A. Munk C et al..  2015.  Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species. Proceedings of the National Academy of Sciences. (2144666966517):E2813-E2819.

Cardone A, Bornstein A, Pant HC, Brady M, Sriram R, Hassan SA.  2015.  Detection and characterization of nonspecific, sparsely populated binding modes in the early stages of complexation.. J Comput Chem. 

Jutla A, Huq A, Colwell RR.  2015.  Diagnostic Approach for Monitoring Hydroclimatic Conditions Related to Emergence of West Nile Virus in West Virginia. Frontiers in Public Health. 

Nasr-Azadani F, Unnikrishnan A, Akanda A, Islam S, Alam M, Huq A, Jutla A, Colwell RR.  2015.  Downscaling river discharge to assess the effects of climate change on cholera outbreaks in the Bengal Delta. Climate Research. 64(3):257-274.

Hill VR, Humphrys MS, Kahler AM, Boncy J, Tarr CL, Huq A, Chen A, Katz LS, Mull BJ, Derado G et al..  2015.  Environmental Surveillance for Toxigenic Vibrio cholerae in Surface Waters of Haiti. The American Journal of Tropical Medicine and Hygiene. 92(1):118-125.

Klinzing DC, Choi SYoung, Hasan NA, Matias RR, Tayag E, Geronimo J, Skowronski E, Rashed SM, Kawashima K, C. Rosenzweig N et al..  2015.  Hybrid Vibrio cholerae  El Tor Lacking SXT Identified as the Cause of a Cholera Outbreak in the Philippines. mBio. (2)

Ceccarelli D, Chen A, Hasan NA, Rashed SM, Huq A, Colwell RR.  2015.  Non-O1/Non-O139 Vibrio cholerae Carrying Multiple Virulence Factors and V. cholerae O1 in the Chesapeake Bay, Maryland. Applied and Environmental Microbiology. (631):1909-1918.

Hasan NA, Rezayat T, Blatz PJ, Choi SYoung, Griffitt KJ, Rashed SM, Huq A, Conger NG, Colwell RR, D. Grimes J.  2015.  Nontoxigenic Vibrio cholerae Non-O1/O139 Isolate from a Case of Human Gastroenteritis in the U.S. Gulf Coast. Journal of Clinical Microbiology. (1):9-14.

Kokashvili T, Whitehouse CA, Tskhvediani A, Grim CJ, Elbakidze T, Mitaishvili N, Janelidze N, Jaiani E, Haley BJ, Lashkhi N et al..  2015.  Occurrence and Diversity of Clinically Important Vibrio Species in the Aquatic Environment of Georgia. Frontiers in Public Health. 

Colwell RR, Unnikrishnan A, Jutla A, Huq A, Akanda A.  2015.  Predictive Time Series Analysis Linking Bengal Cholera with Terrestrial Water Storage Measured from Gravity Recovery and Climate Experiment Sensors. The American Journal of Tropical Medicine and Hygiene. 93(6):1179-1186.

Esteves K, Hervio-Heath D, Mosser T, Rodier C, Tournoud M-G, Jumas-Bilak E, Colwell RR, Monfort P.  2015.  Rapid Proliferation of Vibrio parahaemolyticus, Vibrio vulnificus, and Vibrio cholerae during Freshwater Flash Floods in French Mediterranean Coastal Lagoons. Applied and Environmental Microbiology. (21):7600-7609.

Jutla A, Aldaach H, Billian H, Akanda A, Huq A, Colwell RR.  2015.  Satellite Based Assessment of Hydroclimatic Conditions Related to Cholera in Zimbabwe. PLOS ONE. (9Suppl 1):e0137828.

Bajcsy P, Cardone A, Chalfoun J, Halter M, Juba D, Kociolek M, Majurski M, Peskin A, Simon C, Simon M et al..  2015.  Survey statistics of automated segmentations applied to optical imaging of mammalian cells. BMC bioinformatics. 16:1.

Zaitchik B.F, Guikema S.D, Haley B.J, Taviani E., Chen A., Brown M.E., Huq A., Colwell RR.  2015.  Use of Environmental Parameters to Model Pathogenic Vibrios in Chesapeake Bay. Journal of Environmental Informatics. 

Kirchberger P.C, Turnsek M., Hunt D.E, Haley B.J, Colwell RR, Polz M.F, Tarr C.L, Boucher Y..  2014.  Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. (Pt 95616795215116120545121):3208-3214.

Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AShakur, Bornman DM et al..  2014.  Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing. PLoS ONE. (5):e97699.

Haley BJ, Kokashvili T, Tskshvediani A, Janelidze N, Mitaishvili N, Grim CJ, Constantin_de_Magny G, Chen AJ, Taviani E, Eliashvili T et al..  2014.  Molecular diversity and predictability of Vibrio parahaemolyticus along the Georgian coastal zone of the Black Sea. Frontiers in Microbiology. 5

Alam M, Rashed SM, Bin Mannan S, Islam T, Lizarraga-Partida ML, Delgado G, Morales-Espinosa R, Mendez JLuis, Navarro A, Watanabe H et al..  2014.  Occurrence in Mexico, 1998?2008, of  Vibrio cholerae CTX ^+ El Tor carrying an additional truncated CTX prophage. Proceedings of the National Academy of Sciences. 111(27):9917-9922.

Nguyen VA, Hu Y, Boyd-Graber J.  2013.  Argviz: Interactive Visualization of Topic Dynamics in Multi-party Conversations. Human Language Technologies: The 2013 Annual Conference of the North American Chapter of the Association for Computational Linguistics. 

Hu Y, Boyd-Graber J, III HDaume, Z Ying I.  2013.  Binary to Bushy: Bayesian Hierarchical Clustering with the Beta Coalescent. :1079-1087.

Hara K, Le V, Froehlich J.  2013.  Combining Crowdsourcing and Google Street View to Identify Street-level Accessibility Problems. CHI 2013 To Appear. 

Rashid A, Haley BJ, Rajabov M, Ahmadova S, Gurbanov S, Colwell RR, Huq A.  2013.  Detection of Vibrio cholerae in environmental waters including drinking water reservoirs of Azerbaijan. Environmental Microbiology Reports. (1):30-38.

Hasan NA, Ceccarelli D, Grim CJ, Taviani E, Choi J, Sadique A, Alam M, Siddique AK, R. Sack B, Huq A et al..  2013.  Distribution of Virulence Genes in Clinical and Environmental Vibrio cholerae Strains in Bangladesh. Applied and Environmental Microbiology. (18):5782-5785.

Chomvarin C., Johura F.-T., Mannan S.B, Jumroenjit W., Kanoktippornchai B., Tangkanakul W., Tantisuwichwong N., Huttayananont S., Watanabe H., Hasan N.A et al..  2013.  Drug response and genetic properties of Vibrio cholerae associated with endemic cholera in north-eastern Thailand, 2003-2011. Journal of Medical Microbiology. :599-609.

Clements JD, Connell ND, Dirks C, El-Faham M, Hay A, Heitman E, Stith JH, Bond EC, Colwell RR, Anestidou L et al..  2013.  Engaging Actively with Issues in the Responsible Conduct of Science: Lessons from International Efforts Are Relevant for Undergraduate Education in the United States. CBE?Life Sciences Education. (4):596-603.

Huq A, Hasan N, Akanda A, Whitcombe E, Colwell RR, Haley B, Alam M, Jutla A, R. Sack B.  2013.  Environmental Factors Influencing Epidemic Cholera. The American Journal of Tropical Medicine and Hygiene. 89(3):597-607.

Hara K, Le V, Sun J, Jacobs D, Froehlich J.  2013.  Exploring Early Solutions for Automatically Identifying Inaccessible Sidewalks in the Physical World Using Google Street View. HCIC 2013. 

Hara K, Azenkot S, Campbell M, Bennett CL, Le V, Pannella S, Moore R, Minckler K, Ng RH, Froehlich J.  2013.  Improving public transit accessibility for blind riders by crowdsourcing bus stop landmark locations with Google street view. The 15th International ACM SIGACCESS Conference. :16-8.

Hara K, Sun J, Chazan J, Jacobs D, Froehlich J.  2013.  An Initial Study of Automatic Curb Ramp Detection with Crowdsourced Verification Using Google Street View Images. First AAAI Conference on Human Computation and Crowdsourcing. 

Hekler EB, Klasnja P, Froehlich J, Buman MP.  2013.  Mind the Theoretical Gap: Interpreting, Using, and Developing Behavioral Theory in HCI Research. CHI 2013 To Appear. 

Ceccarelli D, Spagnoletti M, Hasan NA, Lansing S, Huq A, Colwell RR.  2013.  A new integrative conjugative element detected in Haitian isolates of Vibrio cholerae non-O1/non-O139. Research in Microbiology. 164(9):891-893.

Cantet F, Hervio-Heath D, Caro A, Le Mennec C, Monteil C, Quéméré C, Jolivet-Gougeon A, Colwell RR, Monfort P.  2013.  Quantification of Vibrio parahaemolyticus, Vibrio vulnificus and Vibrio cholerae in French Mediterranean coastal lagoons. Research in Microbiology. 164(8):867-874.

Chalfoun J, Kociolek M, Dima A, Halter M, Cardone A, Peskin A, Bajcsy P, Brady M.  2013.  Segmenting time-lapse phase contrast images of adjacent NIH 3T3 cells.. Journal of microscopy. 249(1):41-52.

Mozumder PK, Nahar S, M Naser N, Alam M, Huq A, R Sack B, Colwell RR.  2013.  Species composition of limnetic zooplankton from the southern coastal areas (Mathbaria and Bakerganj) in Bangladesh. Journal of the Asiatic Society of Bangladesh, Science. 38(1)

Cardone A, Pant H, Hassan SA.  2013.  Specific and Non-Specific Protein Association in Solution: Computation of Solvent Effects and Prediction of First-Encounter Modes for Efficient Configurational Bias Monte Carlo Simulations. The Journal of Physical Chemistry B. 117(41):12360-12374.

Haft DH, Selengut JD, Richter RA, Harkins D, Basu MK, Beck E.  2013.  TIGRFAMs and Genome Properties in 2013.. Nucleic Acids Res. 41(Database issue):D387-95.

Jutla A, Akanda AShafqat, Huq A, Faruque ASyed Golam, Colwell RR, Islam S.  2013.  A water marker monitored by satellites to predict seasonal endemic cholera. Remote Sensing Letters. 4472741982394456(8):822-831.

W Easterday R, Kausrud KL, Star B, Heier L, Haley BJ, Ageyev V, Colwell RR, Stenseth NChr.  2012.  An additional step in the transmission of Yersinia pestis? The ISME Journal. (2):231-236.

Haft DH, Payne SH, Selengut JD.  2012.  Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification.. J Bacteriol. 194(1):36-48.

Roy A, Halder B, Garain U, Doermann D.  2012.  Automatic Authentication of Banknotes. IEEE Transactions on Information Forensics & Security. 

Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP et al..  2012.  BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst Biol. 61(1):170-173.

Gevers D, Pop M, Schloss PD, Huttenhower C.  2012.  Bioinformatics for the Human Microbiome Project. PLoS Computational Biology. 8(11):e1002779.

Xie B, Tom Yeh, Walsh G, Watkins I, Huang M.  2012.  Co-designing an e-health tutorial for older adults. Proceedings of the 2012 iConference. :240-247.

Han B, Davis LS.  2012.  Density-Based Multifeature Background Subtraction with Support Vector Machine. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 34(5):1017-1023.

Huq A, Haley BJ, Taviani E, Chen A, Hasan NA, Colwell RR.  2012.  Detection, Isolation, and Identification of Vibrio cholerae from the Environment. Current Protocols in Microbiology. 26(1)

Larson E, Froehlich J, Campbell T, Haggerty C, Atlas L, Fogarty J, Patel SN.  2012.  Disaggregated water sensing from a single, pressure-based sensor: An extended analysis of HydroSense using staged experiments. Pervasive and Mobile Computing. 8(1):82-102.

Rotman D, Preece J, Hammock J, Procita K, Hansen D, Parr C, Lewis D, Jacobs DW.  2012.  Dynamic changes in motivation in collaborative citizen-science projects. Proceedings of the ACM 2012 conference on Computer Supported Cooperative Work. :217-226.

Johnson CN, Bowers JC, Griffitt KJ, Molina V, Clostio RW, Pei S, Laws E, Paranjpye RN, Strom MS, Chen A et al..  2012.  Ecology of Vibrio parahaemolyticus and Vibrio vulnificus in the Coastal and Estuarine Waters of Louisiana, Maryland, Mississippi, and Washington (United States). Applied and Environmental Microbiology. (20):7249-7257.

Hu Y, Boyd-Graber J.  2012.  Efficient Tree-Based Topic Modeling. Association for Computational Linguistics. 

Larson E, Froehlich J, Campbell T, Haggerty C, Atlas L, Fogarty J, Patel SN.  2012.  Fast track article: Disaggregated water sensing from a single, pressure-based sensor: An extended analysis of HydroSense using staged experiments. Pervasive Mob. Comput.. 8(1):82-102.

Hara K, Le V, Froehlich J.  2012.  A feasibility study of crowdsourcing and google street view to determine sidewalk accessibility. :273-274.

Methé BA, Nelson KE, Pop M, Creasy HH, Giglio MG, Huttenhower C, Gevers D, Petrosino JF, Abubucker S, Badger JH.  2012.  A framework for human microbiome research. Nature. 486:215-221.

Rashed S.M, Mannan S.B, Johura F.-T., Islam M.T, Sadique A., Watanabe H., Sack R.B, Huq A., Colwell RR, Cravioto A. et al..  2012.  Genetic characteristics of drug-resistant Vibrio cholerae O1 causing endemic cholera in Dhaka, 2006-2011. Journal of Medical Microbiology. :1736-1745.

Taviani E, Spagnoletti M, Ceccarelli D, Haley BJ, Hasan NA, Chen A, Colombo MM, Huq A, Colwell RR.  2012.  Genomic analysis of ICE Vch Ban8: An atypical genetic element in Vibrio cholerae. FEBS Letters. (11):1617-1621.

Hasan N.A, Choi S.Y, Eppinger M., Clark P.W, Chen A., Alam M., Haley B.J, Taviani E., Hine E., Su Q. et al..  2012.  Genomic diversity of 2010 Haitian cholera outbreak strains. Proceedings of the National Academy of Sciences. :E2010-E2017.

Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.

Heer J, Shneiderman B.  2012.  Interactive Dynamics for Visual Analysis. Queue - Micoprocessors. 10(2):30:30?30:55-30:30?30:55.

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.

Alam M, Islam TM, Rashed S M, Johura F-T, Bhuiyan NA, Delgado G, Morales R, Mendez J L, Navarro A, Watanabe H et al..  2012.  Vibrio Cholerae Classical Biotype Strains Reveal Distinct Signatures in Mexico. Journal of Clinical Microbiology. 

Haley BJ, Chen A, Grim CJ, Clark P, Diaz CM, Taviani E, Hasan NA, Sancomb E, Elnemr WM, Islam MA et al..  2012.  Vibrio cholerae in a historically cholera-free country. Environmental Microbiology Reports. (4):381-389.

Vezzulli L, Brettar I, Pezzati E, Reid PC, Colwell RR, Höfle MG, Pruzzo C.  2012.  Long-term effects of ocean warming on the prokaryotic community: evidence from the vibrios. The ISME Journal. 6111114882511(1):21-30.

Han B, Hui P, Kumar VSA, Marathe MV, Shao J, Srinivasan A.  2012.  Mobile Data Offloading through Opportunistic Communications and Social Participation. Mobile Computing, IEEE Transactions on. 11(5):821-834.

Zhai K, Hu Y, Williamson S, Boyd-Graber J.  2012.  Modeling Images using Transformed Indian Buffet Processes. International Conference of Machine Learning. 

Mozumder PK, Banu MA, Naser MN, Ali MS, Alam M, Sack RB, Colwell RR, Huq A.  2012.  Occurrence of protozoans & their limnological relationships in some ponds of Mathbaria, Bangladesh. University Journal of Zoology, Rajshahi University. 29(1):69-71.

Hwang H, Lauw HW, Getoor L, Ntoulas A.  2012.  Organizing User Search Histories. Knowledge and Data Engineering, IEEE Transactions on. 24(5):912-925.

Sane N, Ford J, Harris AI, Bhattacharyya SS.  2012.  Prototyping scalable digital signal processing systems for radio astronomy using dataflow models. Radio Science. 47(3):n/a-n/a.

Huang Y, Katz J, Evans D.  2012.  Quid Pro Quo-tocols: Strengthening Semi-Honest Protocols with Dual Execution. IEEE Symposium on Security and Privacy. 

Stauder M, Huq A, Pezzati E, Grim CJ, Ramoino P, Pane L, Colwell RR, Pruzzo C, Vezzulli L.  2012.  Role of GbpA protein, an important virulence-related colonization factor, for Vibrio cholerae's survival in the aquatic environment. Environmental Microbiology Reports. (4):439-445.

Nahar S, Sultana M, Naser NM, Nair GB, Watanabe H, Ohnishi M, Yamamoto S, Endtz H, Cravioto A, Sack BR et al..  2012.  Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in Microbiology. 2:260

Choi S, Hwang KW, Katz J, Malkin T, Rubenstein D.  2012.  Secure multi-party computation of boolean circuits with applications to privacy in on-line marketplaces. Topics in Cryptology?CT-RSA 2012. :416-432.

Huttenhower C, Gevers D, Knight R, Abubucker S, Badger JH, Chinwalla AT, Creasy HH, Earl AM, Fitzgerald MG, Fulton RS et al..  2012.  Structure, function and diversity of the healthy human microbiome. Nature. 486:207-214.

Banakar V, Constantin de Magny G, Jacobs J, Murtugudde R, Huq A, J. Wood R, Colwell RR.  2012.  Temporal and Spatial Variability in the Distribution of Vibrio vulnificus in the Chesapeake Bay: A Hindcast Study. EcoHealth. :1-12.

Ricaldi JN, Fouts DE, Selengut JD, Harkins DM, Patra KP, Moreno A, Lehmann JS, Purushe J, Sanka R, Torres M et al..  2012.  Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity.. PLoS Negl Trop Dis. 6(10):e1853.

Wobbrock JO, Kane SK, Gajos KZ, Harada S, Froehlich J.  2011.  Ability-based design: Concept, principles and examples. ACM Transactions on Accessible Computing (TACCESS). 3(3)

Yaklichkin S Y, Darnell DK, Pier MV, Antin PB, Hannenhalli S.  2011.  Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1. BMC Evolutionary Biology. 11(1):302-302.

Hurter C, Girouard A, Riche N, Plaisant C.  2011.  Active progress bars: facilitating the switch to temporary activities. Proceedings of the 2011 annual conference extended abstracts on Human factors in computing systems. :1963-1968.

Falk J, Zebelein C, Keinert J, Haubelt C, Teich J, Bhattacharyya SS.  2011.  Analysis of SystemC actor networks for efficient synthesis. ACM Trans. Embed. Comput. Syst.. 10(2):18:1-18:34.

Huq A, Grim CJ, Colwell RR.  2011.  Aquatic Realm and Cholera. Epidemiological and Molecular Aspects on Cholera. :311-339.

Haeupler B, Saha B, Srinivasan A.  2011.  Article 28 (28 pages)-New Constructive Aspects of the Lovász Local Lemma. Journal of the ACM-Association for ComputingMachinery. 58(6)

Oh S, Hoogs A, Perera A, Cuntoor N, Chen C-C, Lee J T, Mukherjee S, Aggarwal JK, Lee H, Davis LS et al..  2011.  AVSS 2011 demo session: A large-scale benchmark dataset for event recognition in surveillance video. Advanced Video and Signal-Based Surveillance (AVSS), 2011 8th IEEE International Conference on. :527-528.

Hopkins JK, Spranklin BW, Gupta SK.  2011.  A Case Study in Optimization of Gait and Physical Parameters for a Snake-Inspired Robot Based on a Rectilinear Gait. Journal of mechanisms and robotics. 3(1)

Halter M, Sisan DR, Chalfoun J, Stottrup BL, Cardone A, Dima AA, Tona A, Plant AL, Elliott JT.  2011.  Cell cycle dependent TN-C promoter activity determined by live cell imaging.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 79(3):192-202.

Alam M, Islam A, Bhuiyan NA, Rahim N, Hossain A, Khan GY, Ahmed D, Watanabe H, Izumiya H, Faruque ASG et al..  2011.  Clonal transmission, dual peak, and off-season cholera in Bangladesh. Infection Ecology & Epidemiology. 1(1)

Gordon DS, Hazay C, Katz J, Lindell Y.  2011.  Complete Fairness in Secure Two-Party Computation. Journal of the ACM. 58(6):24:1?24:37-24:1?24:37.

Xie B, Tom Yeh, Walsh G, Watkins I, Huang M.  2011.  Co?designing contextual tutorials for older adults on searching health information on the internet. Proceedings of the American Society for Information Science and Technology. 48(1):1-4.

Tom Yeh, Chang T-H, Xie B, Walsh G, Watkins I, Wongsuphasawat K, Huang M, Davis LS, Bederson BB.  2011.  Creating contextual help for GUIs using screenshots. Proceedings of the 24th annual ACM symposium on User interface software and technology. :145-154.

Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Celià-Terrassa T, Mercatali L, Khan Z, Goodarzi H, Hua Y et al..  2011.  Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization. Nature Medicine. 17(9):1101-1108.

Ma K-K, Yit Phang K, Foster JS, Hicks MW.  2011.  Directed Symbolic Execution. Static AnalysisStatic Analysis. 6887:95-111.

Mardziel P, Magill S, Hicks MW, Srivatsa M.  2011.  Dynamic Enforcement of Knowledge-Based Security Policies. Computer Security Foundations Symposium (CSF), 2011 IEEE 24th. :114-128.

An J-hoon(D), Chaudhuri A, Foster JS, Hicks MW.  2011.  Dynamic inference of static types for ruby. Proceedings of the 38th annual ACM SIGPLAN-SIGACT symposium on Principles of programming languages. :459-472.

Hsiao HC, Studer A, Dubey R, Elaine Shi, Perrig A.  2011.  Efficient and secure threshold-based event validation for vanets. 

Huang Y, Malka L, Evans D, Katz J.  2011.  Efficient privacy-preserving biometric identification. Network and Distributed System Security Symposium. 

Huang Y, Shen C, Evans D, Katz J, Shelat A.  2011.  Efficient Secure Computation with Garbled Circuits. Information Systems Security. :28-48.

Hochheiser H, Shneiderman B.  2011.  Electronic medical records: usability challenges and opportunities. Interactions. 18(6):48-49.

Khaladkar M, Smyda M, Hannenhalli S.  2011.  Epigenomic and RNA structural correlates of polyadenylation. RNA Biology. 8(3):529-537.

Hayden C, Smith E, Hardisty E, Hicks MW, Foster JS.  2011.  Evaluating Dynamic Software Update Safety Using Systematic Testing. IEEE Transactions on Software Engineering. PP(99):1-1.

Hansen D, Smith MA, Shneiderman B.  2011.  EventGraphs: Charting Collections of Conference Connections. 2011 44th Hawaii International Conference on System Sciences (HICSS). :1-10.

Hicks MW, Nettles S, Seong-Kyu S, Shannon S.  2011.  Evolution in Action: Using Active Networking to Evolve Network Support for Mobility. IFIP Lecture Notes in Computer Science (LNCS). 2546(2546):146-161.

Gopalan R, Schwartz WR, Chellappa R, Srivastava A.  2011.  Face Detection. Visual Analysis of HumansVisual Analysis of Humans. :71-90.

Huang Y, Evans D, Katz J, Malka L.  2011.  Faster secure two-party computation using garbled circuits. USENIX Security Symposium. 

Dewey FE, Perez MV, Wheeler MT, Watt C, Spin J, Langfelder P, Horvath S, Hannenhalli S, Cappola TP, Ashley EA.  2011.  Gene Coexpression Network Topology of Cardiac Development, Hypertrophy, and FailureClinical Perspective. Circulation: Cardiovascular GeneticsCirc Cardiovasc Genet. 4(1):26-35.

Vishnoi A, Sethupathy P, Simola D, Plotkin JB, Hannenhalli S.  2011.  Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces Paradoxus. Molecular Biology and EvolutionMol Biol Evol. 28(9):2615-2627.

Rodrigues EM, Milic-Frayling N, Smith M, Shneiderman B, Hansen D.  2011.  Group-in-a-Box Layout for Multi-faceted Analysis of Communities. Privacy, Security, Risk and Trust (PASSAT), 2011 IEEE Third International Conference on and 2011 IEEE Third International Confernece on Social Computing (SocialCom). :354-361.

Hourcade J P, Bullock-Rest NE, Friedman B, Nelson M, Shneiderman B, Zaphiris P.  2011.  HCI for peace: from idealism to concrete steps. PART 2 ???? Proceedings of the 2011 annual conference extended abstracts on Human factors in computing systems. :613-616.

Patel VM, Pillai JK, Chellappa R.  2011.  Image and Video-Based Biometrics. Visual Analysis of HumansVisual Analysis of Humans. :437-454.

Hettinger AZ, Rackoff A, Wongsuphasawat K, Cheng H, Fairbanks RJ, Plaisant C, Smith MS.  2011.  Improved Identification and Visualization of Emergency Department Patient Visits. Annals of Emergency Medicine. 58(4):S309-S309.

Kirschner AKT, Schauer S, Steinberger B, Wilhartitz I, Grim CJ, Huq A, Colwell RR, Herzig A, Sommer R.  2011.  Interaction of Vibrio cholerae non-O1/non-O139 with Copepods, Cladocerans and Competing Bacteria in the Large Alkaline Lake Neusiedler See, Austria. Microbial ecology. 61(3):496-506.

Hu Y, Boyd-Graber J, Satinoff B.  2011.  Interactive topic modeling. :248-257.

Boltcheva D, Canino D, Merino Aceituno S, Léon J-C, De Floriani L, Hétroy F.  2011.  An iterative algorithm for homology computation on simplicial shapes. Computer-Aided Design. 43(11):1457-1467.

Oh S, Hoogs A, Perera A, Cuntoor N, Chen C-C, Lee J T, Mukherjee S, Aggarwal JK, Lee H, Davis LS et al..  2011.  A large-scale benchmark dataset for event recognition in surveillance video. Computer Vision and Pattern Recognition (CVPR), 2011 IEEE Conference on. :3153-3160.

Swamy N, Guts N, Leijen D, Hicks MW.  2011.  Lightweight monadic programming in ML. Proceedings of the 16th ACM SIGPLAN international conference on Functional programming. :15-27.

Pratikakis P, Foster JS, Hicks MW.  2011.  LOCKSMITH: Practical static race detection for C. ACM Trans. Program. Lang. Syst.. 33(1):3:1?3:55-3:1?3:55.

Froehlich J, Larson E, Saba E, Campbell T, Atlas L, Fogarty J, Patel S.  2011.  A Longitudinal Study of Pressure Sensing to Infer Real-World Water Usage Events in the Home. Pervasive ComputingPervasive Computing. 6696:50-69.

Froehlich J, Larson E, Saba E, Campbell T, Atlas L, Fogarty J, Patel S.  2011.  A Longitudinal Study of Pressure Sensing to Infer Real-World Water Usage Events in the Home. Pervasive Computing. 6696:50-69.

Vezzulli L, Brettar I, Pezzati E, Reid PC, Colwell RR, Höfle MG, Pruzzo C.  2011.  Long-term effects of ocean warming on the prokaryotic community: evidence from the vibrios. The ISME Journal. 6(1):21-30.

Horak MN, Nowick SM, Carlberg M, Vishkin U.  2011.  A Low-Overhead Asynchronous Interconnection Network for GALS Chip Multiprocessors. Computer-Aided Design of Integrated Circuits and Systems, IEEE Transactions on. 30(4):494-507.

Markowitz E, Bernstam EV, Herskovic J, Zhang J, Shneiderman B, Plaisant C, Johnson TR.  2011.  Medication Reconciliation: Work Domain Ontology, Prototype Development, and a Predictive Model. AMIA Annual Symposium ProceedingsAMIA Annu Symp Proc. 2011:878-887.

Hasan NA, Chowdhury BW, Rahim N, Sultana M, Shabnam AS, Mai V, Ali A, Morris GJ, Sack BR, Huq A et al..  2011.  Metagenomic 16S rDNA Targeted PCR-DGGE in Determining Bacterial Diversity in Aquatic Ecosystem. Bangladesh Journal of Microbiology. 27(2)

Weiss K, De Floriani L, Hagen H.  2011.  Modeling Multiresolution 3D Scalar Fields through Regular Simplex Bisection. Scientific Visualization: Interactions, Features, Metaphors. 2:360-377.

Violi N, Shneiderman B, Hanson A, Rey PJ.  2011.  Motivation for Participation in Online Neighborhood Watch Communities: An Empirical Study Involving Invitation Letters. Privacy, Security, Risk and Trust (PASSAT), 2011 IEEE Third International Conference on and 2011 IEEE Third International Confernece on Social Computing (SocialCom). :760-765.

Turpie J, Reisner E, Foster JS, Hicks MW.  2011.  MultiOtter: Multiprocess Symbolic Execution. Technical Reports of the Computer Science Department. 

Hsu C-J, Pino J L, Bhattacharyya SS.  2011.  Multithreaded Simulation for Synchronous Dataflow Graphs. ACM Trans. Des. Autom. Electron. Syst.. 16(3):25:1-25:23.

Gurbanov S, Akhmadov R, Shamkhalova G, Akhmadova S, Haley BJ, Colwell RR, Huq A.  2011.  Occurrence of Vibrio cholerae in Municipal and Natural Waters and Incidence of Cholera in Azerbaijan. EcoHealth. (4):468-477.

Hansen DL, Jacobs DW, Lewis D, Biswas A, Preece J, Rotman D, Stevens E.  2011.  Odd Leaf Out: Improving Visual Recognition with Games. Privacy, security, risk and trust (passat), 2011 ieee third international conference on and 2011 ieee third international conference on social computing (socialcom). :87-94.

Huang Y, Evans D, Katz J.  2011.  Private Set Intersection: Are Garbled Circuits Better than Custom Protocols? 19th Network and Distributed Security Symposium. 

Basu MK, Selengut JD, Haft DH.  2011.  ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process.. BMC Bioinformatics. 12:434.

Tarkan S, Plaisant C, Shneiderman B, Hettinger ZA.  2011.  Reducing Missed Laboratory Results: Defining Temporal Responsibility, Generating User Interfaces for Test Process Tracking, and Retrospective Analyses to Identify Problems. AMIA Annual Symposium ProceedingsAMIA Annu Symp Proc. 2011:1382-1391.

Tian Y, Zhang Y, Hurd L, Hannenhalli S, Liu F, Lu M M, Morrisey EE.  2011.  Regulation of Lung Endoderm Progenitor Cell Behavior by miR302/367. DevelopmentDevelopment. 138(7):1235-1245.

Kandel S, Heer J, Plaisant C, Kennedy J, Van Ham F, Riche N H, Weaver C, Lee B, Brodbeck D, Buono P.  2011.  Research Directions in Data Wrangling: Visualizations and Transformations for Usable and Credible Data. Information VisualizationInformation Visualization. 10(4):271-288.

De Magny G C, Mozumder PK, Grim CJ, Hasan NA, Naser NM, Alam M, Sack BR, Huq A, Colwell RR.  2011.  Role of Zooplankton Diversity in Vibrio Cholerae Population Dynamics and in the Incidence of Cholera in the Bangladesh Sundarbans. Applied and Environmental Microbiology. 77(17):6125-6132.

Hu Q, Gumerov NA, Duraiswami R.  2011.  Scalable fast multipole methods on distributed heterogeneous architectures. High Performance Computing, Networking, Storage and Analysis (SC), 2011 International Conference for. :1-12.

Hayden CM, Smith EK, Hicks MW, Foster JS.  2011.  State transfer for clear and efficient runtime updates. 2011 IEEE 27th International Conference on Data Engineering Workshops (ICDEW). :179-184.

Kimes NE, Grim CJ, Johnson WR, Hasan NA, Tall BD, Kothary MH, Kiss H, Munk CA, Tapia R, Green L et al..  2011.  Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. The ISME Journal. 6(4):835-846.

Hu Q, Syal M, Gumerov NA, Duraiswami R, Leishman JG.  2011.  Toward improved aeromechanics simulations using recent advancements in scientific computing. Proceedings 67th Annual Forum of the American Helicopter Society. :3-5.

Nguyen H V, Banerjee A, Burlina P, Broadwater J, Chellappa R.  2011.  Tracking and Identification via Object Reflectance Using a Hyperspectral Video Camera. Machine Vision Beyond Visible SpectrumMachine Vision Beyond Visible Spectrum. 1:201-219.

Everett LJ, Jensen ST, Hannenhalli S.  2011.  Transcriptional Regulation Via TF-Modifying Enzymes: An Integrative Model-Based Analysis. Nucleic Acids ResearchNucl. Acids Res.. 39(12):e78-e78-e78-e78.

Haghpanah Y, desJardins M, others.  2011.  A trust model for supply chain management. The 10th International Conference on Autonomous Agents and Multiagent Systems-Volume 3. :1375-1376.

Kembhavi A, Harwood D, Davis LS.  2011.  Vehicle Detection Using Partial Least Squares. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 33(6):1250-1265.

Chetty M, Haslem D, Baird A, Ofoha U, Sumner B, Grinter R.  2011.  Why is My Internet Slow?: Making Network Speeds Visible SIGCHI '11. :1889-1898.

Hicks MW, Foster JS.  2010.  Adapting Scrum to Managing a Research Group. Technical Reports of the Computer Science Department. 

HAMMOUD R, Porikli F, Davis LS.  2010.  Advanced tracking systems: computational approaches to be introduced to new series. Augmented vision & reality. 1

Horvitz E, Getoor L, Guestrin C, Hendler J, Konstan J, Subramanian D, Wellman M, Kautz H.  2010.  AI Theory and Practice: A Discussion on Hard Challenges and Opportunities Ahead. AI Magazine. 31(3):103-114.

Hansen D, Shneiderman B, Smith MA.  2010.  Analyzing Social Media Networks with NodeXL. 

Hansen D, Shneiderman B, Smith MA.  2010.  Analyzing Social Media Networks with NodeXL: Insights from a Connected World. :302.

Chekuri C, Hajiaghayi MT, Kortsarz G, Salavatipour MR.  2010.  Approximation Algorithms for Non-Uniform Buy-at-Bulk Network Design. SIAM Journal on Computing. 39(5):1772-1798.

Webber W, Oard D, Scholer F, Hedin B.  2010.  Assessor error in stratified evaluation. Proceedings of the 19th ACM international conference on Information and knowledge management. :539-548.

Horvitz O, Katz J.  2010.  Bounds on the efficiency of black-box commitment schemes. Theoretical Computer Science. 411(10):1251-1260.

Han B, Hui P, Kumar AVS, Marathe MV, Pei G, Srinivasan A.  2010.  Cellular traffic offloading through opportunistic communications: a case study. Proceedings of the 5th ACM workshop on Challenged networks. :31-38.

Sayyadi H, Edmonds J, Hristidis V, Raschid L.  2010.  Challenges in personalized authority flow based ranking of social media. Proceedings of the 19th ACM international conference on Information and knowledge management. :1409-1412.

Druin A, Foss E, Hutchinson H, Golub E, Hatley L.  2010.  Children's roles using keyword search interfaces at home. Proceedings of the 28th international conference on Human factors in computing systems. :413-422.

Brown Q, Bonsignore E, Hatley L, Druin A, Walsh G, Foss E, Brewer R, Hammer J, Golub E.  2010.  Clear Panels: a technique to design mobile application interactivity. Proceedings of the 8th ACM Conference on Designing Interactive Systems. :360-363.

Hasan NA, Grim CJ, Haley BJ, Chun J, Alam M, Taviani E, Hoq M, Munk CA, Colwell RR.  2010.  Comparative Genomics of Clinical and Environmental Vibrio Mimicus. Proceedings of the National Academy of SciencesPNAS. 107(49):21134-21139.

Patel VM, Easley GR, Healy DM, Chellappa R.  2010.  Compressed Synthetic Aperture Radar. IEEE Journal of Selected Topics in Signal Processing. 4(2):244-254.

Ntoulas A, Hwang H, Getoor L, Paparizos S, Lauw H W.  2010.  Context-Aware Query Recommendations. 12/408,726

Senoh M, Ghosh?Banerjee J, Ramamurthy T, Hamabata T, Kurakawa T, Takeda M, Colwell RR, Nair BG, Takeda Y.  2010.  Conversion of viable but nonculturable Vibrio cholerae to the culturable state by co?culture with eukaryotic cells. Microbiology and Immunology. 54(9):502-507.

Singh LN, Hannenhalli S.  2010.  Correlated Changes Between Regulatory Cis Elements and Condition-Specific Expression in Paralogous Gene Families. Nucleic Acids ResearchNucl. Acids Res.. 38(3):738-749.

Saha B, Hoch A, Khuller S, Raschid L, Zhang XN.  2010.  Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs. Research in Computational Molecular Biology. :456-472.

Bredin JL, Demaine ED, Hajiaghayi MT, Rus D.  2010.  Deploying sensor networks with guaranteed fault tolerance. IEEE/ACM Transactions on Networking (TON). 18(1):216-228.

Taviani E, Grim CJ, Choi J, Chun J, Haley B, Hasan NA, Huq A, Colwell RR.  2010.  Discovery of novel Vibrio cholerae VSP?II genomic islands using comparative genomic analysis. FEMS Microbiology Letters. 308(2):130-137.

Purdy AE, Balch D, Lizárraga?Partida M L, Islam M S, Martinez?Urtaza J, Huq A, Colwell RR, Bartlett DH.  2010.  Diversity and distribution of cholix toxin, a novel ADP?ribosylating factor from Vibrio cholerae. Environmental Microbiology Reports. 2(1):198-207.

Feamster N, Voellmy A, Agarwal A, Hudak P, Burnett S, Launchbury J.  2010.  Don't Configure the Network, Program It! Domain-Specific Programming Languages for Network Systems. YALEU/DCS/RR-1432

Lumezanu C, Levin D, Han B, Spring N, Bhattacharjee B.  2010.  Don't love thy nearest neighbor. Proceedings of the 9th international conference on Peer-to-peer systems. :5-5.

Martin J-P, Hicks MW, Costa M, Akritidis P, Castro M.  2010.  Dynamically checking ownership policies in concurrent c/c++ programs. Proceedings of the 37th annual ACM SIGPLAN-SIGACT symposium on Principles of programming languages. :457-470.

Caburlotto G, Lleò MM, Hilton T, Huq A, Colwell RR, Kaper JB.  2010.  Effect on Human Cells of Environmental Vibrio Parahaemolyticus Strains Carrying Type III Secretion System 2. Infection and ImmunityInfect. Immun.. 78(7):3280-3287.

Vezzulli L, Pruzzo C, Huq A, Colwell RR.  2010.  Environmental reservoirs of Vibrio cholerae and their role in cholera. Environmental Microbiology Reports. 2(1):27-33.

Oard D, Baron JR, Hedin B, Lewis DD, Tomlinson S.  2010.  Evaluation of information retrieval for E-discovery. Artificial Intelligence and Law. 18:347-386.

Roe A, Weller S, Baixeras J, Brown JW, Cummings MP, Davis DR, Horak M, Kawahara AY, Mitter C, Parr CS et al..  2010.  Evolutionary framework for Lepidoptera model systems. Genetics and Molecular Biology of LepidopteraGenetics and Molecular Biology of Lepidoptera. :1-24.

Hochheiser H, Shneiderman B.  2010.  From bowling alone to tweeting together: technology-mediated social participation. Interactions. 17(2):64-67.

Lee S, Bhattacharjee B, Banerjee S, Han B.  2010.  A general framework for efficient geographic routing in wireless networks. Computer Networks. 54(5):844-861.

Rohlfing A-K, Miteva Y, Hannenhalli S, Lamitina T.  2010.  Genetic and Physiological Activation of Osmosensitive Gene Expression Mimics Transcriptional Signatures of Pathogen Infection in C. elegans. PLoS ONEPLoS ONE. 5(2):e9010-e9010.

Grim CJ, Hasan NA, Taviani E, Haley B, Chun J, Brettin TS, Bruce DC, Detter CJ, Han CS, Chertkov O et al..  2010.  Genome Sequence of Hybrid Vibrio Cholerae O1 MJ-1236, B-33, and CIRS101 and Comparative Genomics with V. Cholerae. Journal of BacteriologyJ. Bacteriol.. 192(13):3524-3533.

Srinivasan BV, Hu Q, Duraiswami R.  2010.  GPUML: Graphical processors for speeding up kernel machines. Workshop on High Performance Analytics-Algorithms, Implementations, and Applications. 

Trivedi CM, Zhu W, Wang Q, Jia C, Kee H J, Li L, Hannenhalli S, Epstein JA.  2010.  Hopx and Hdac2 Interact to Modulate Gata4 Acetylation and Embryonic Cardiac Myocyte Proliferation. Developmental Cell. 19(3):450-459.

Whitehouse CA, Baldwin C, Sampath R, Blyn LB, Melton R, Li F, Hall TA, Harpin V, Matthews H, Tediashvili M et al..  2010.  Identification of Pathogenic Vibrio Species by Multilocus PCR-Electrospray Ionization Mass Spectrometry and Its Application to Aquatic Environments of the Former Soviet Republic of Georgia. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 76(6):1996-2001.

Resnik P, Buzek O, Hu C, Kronrod Y, Quinn A, Bederson BB.  2010.  Improving translation via targeted paraphrasing. Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing. :127-137.

Dorr BJ, Passonneau RJ, Farwell D, Green R, Habash N, Helmreich S, Hovy E, Levin L, Miller KJ, Mitamura T et al..  2010.  Interlingual Annotation of Parallel Text Corpora: A New Framework for Annotation and Evaluation. Natural Language Engineering. 16(03):197-243.

Hao S, Feamster N, Pandrangi R.  2010.  An Internet Wide View into DNS Lookup Patterns. 

Gopalan R, Hong T, Shneier M, Chellappa R.  2010.  A Learning Approach Towards Detection and Tracking of Lane Markings. IEEE Transactions on Intelligent Transportation Systems. PP(99):1-12.

Basili VR, Lindvall M, Regardie M, Seaman C, Heidrich J, Munch J, Rombach D, Trendowicz A.  2010.  Linking Software Development and Business Strategy Through Measurement. Computer. 43(4):57-65.

Han B, Schulman A, Gringoli F, Spring N, Bhattacharjee B, Nava L, Ji L, Lee S, Miller R.  2010.  Maranello: practical partial packet recovery for 802.11. Proceedings of the 7th USENIX conference on Networked systems design and implementation. :14-14.

He S, M. Wu.  2010.  Method for fingerprinting multimedia content. 11/326,313(7814564)

Hansen M, Everett L, Singh L, Hannenhalli S.  2010.  Mimosa: Mixture model of co-expression to detect modulators of regulatory interaction. Algorithms for Molecular Biology. 5(1):4-4.

Han B, Hui P, Srinivasan A.  2010.  Mobile data offloading in metropolitan area networks. SIGMOBILE Mob. Comput. Commun. Rev.. 14(4):28-30.

Hardisty EA, Boyd-Graber J, Resnik P.  2010.  Modeling perspective using adaptor grammars. Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing. :284-292.

Han B, Joo SW, Davis LS.  2010.  Multi-Camera Tracking with Adaptive Resource Allocation. International Journal of Computer Vision. :1-14.

Haeupler B, Saha B, Srinivasan A.  2010.  New Constructive Aspects of the Lovasz Local Lemma. 2010 51st Annual IEEE Symposium on Foundations of Computer Science (FOCS). :397-406.

Berthier R, Cukier M, Hiltunen M, Kormann D, Vesonder G, Sheleheda D.  2010.  Nfsight: netflow-based network awareness tool. 

Grim CJ, Choi J, Chun J, Jeon Y-S, Taviani E, Hasan NA, Haley B, Huq A, Colwell RR.  2010.  Occurrence of the Vibrio cholerae seventh pandemic VSP-I island and a new variant. OMICS: A Journal of Integrative Biology. 14(1):1-7.

Chalfoun J, Cardone A, Dima AA, Allen DP, Halter MW.  2010.  Overlap-based cell tracker. The Journal of Research of the National Institute of Standards and Technology. 115(6)

Caceres A, Shang F, Wawrousek E, Liu Q, Avidan O, Cvekl A, Yang Y, Haririnia A, Storaska A, Fushman D et al..  2010.  Perturbing the Ubiquitin Pathway Reveals How Mitosis Is Hijacked to Denucleate and Regulate Cell Proliferation and Differentiation In Vivo. PLoS ONEPLoS ONE. 5(10):e13331-e13331.

Haley BJ, Grim CJ, Hasan NA, Taviani E, Chun J, Brettin TS, Bruce DC, Challacombe JF, Detter CJ, Han CS et al..  2010.  The pre?seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir. Environmental Microbiology Reports. 2(1):208-216.

Everett L, Hansen M, Hannenhalli S.  2010.  Regulating the Regulators: Modulators of Transcription Factor Activity. Computational Biology of Transcription Factor BindingComputational Biology of Transcription Factor Binding. 674:297-312.

Huang S, Cohen MB, Memon AM.  2010.  Repairing GUI Test Suites Using a Genetic Algorithm. Software Testing, Verification and Validation (ICST), 2010 Third International Conference on. :245-254.

Horvitz E, Getoor L, Guestrin C, Hendler J, Kautz H, Konstan J, Subramanian D, Wellman M.  2010.  REPORTS AI Theory and Practice: A Discussion on Hard Challenges and Opportunities Ahead. AI Magazine. 31(3):87-87.

Li Y, Yu X, Ho J, Fushman D, Allewell NM, Tuchman M, Shi D.  2010.  Reversible Post-Translational Carboxylation Modulates the Enzymatic Activity of N-Acetyl-l-ornithine Transcarbamylase. Biochemistry. 49(32):6887-6895.

Patro R, Ip CY, Varshney A, Hagen H.  2010.  Saliency Guided Summarization of Molecular Dynamics Simulations. Scientific Visualization: Advanced Concepts. 1:321-335.

Huang D-W, Jimmy Lin.  2010.  Scaling Populations of a Genetic Algorithm for Job Shop Scheduling Problems Using MapReduce. Cloud Computing Technology and Science (CloudCom), 2010 IEEE Second International Conference on. :780-785.

Hicks MW, Foster JS.  2010.  SCORE: agile research group management. Commun. ACM. 53(10):30-31.

Meister JA, Foster JS, Hicks MW.  2010.  Serializing C intermediate representations for efficient and portable parsing. Software: Practice and Experience. 40(3):225-238.

Caburlotto G, Haley BJ, Lleò MM, Huq A, Colwell RR.  2010.  Serodiversity and ecological distribution of Vibrio parahaemolyticus in the Venetian Lagoon, Northeast Italy. Environmental Microbiology Reports. 2(1):151-157.

Sane N, Hsu C-J, Pino JL, Bhattacharyya SS.  2010.  Simulating dynamic communication systems using the core functional dataflow model. 2010 IEEE International Conference on Acoustics Speech and Signal Processing (ICASSP). :1538-1541.

Selengut JD, Rusch DB, Haft DH.  2010.  Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function.. BMC Bioinformatics. 11:52.

Chellappa R, Heinzelman W, Konrad J, Schonfeld D, Wolf M.  2010.  Special Section on Distributed Camera Networks: Sensing, Processing, Communication, and Implementation. Image Processing, IEEE Transactions on. 19(10):2513-2515.

Srivastava A, Damon JN, Dryden IL, Jermyn IH, Das S, Vaswani N, Huckemann S, Hotz T, Munk A, Lin Z et al..  2010.  SPECIAL SECTION ON SHAPE ANALYSIS AND ITS APPLICATIONS IN IMAGE UNDERSTANDING. IEEE Transactions on Pattern Analysis and Machine Intelligence. 32(4):0162-8828.

May R, Hanrahan P, Keim DA, Shneiderman B, Card S.  2010.  The state of visual analytics: Views on what visual analytics is and where it is going. 2010 IEEE Symposium on Visual Analytics Science and Technology (VAST). :257-259.

Cardone A, Hassan SA, Albers RW, Sriram RD, Pant HC.  2010.  Structural and dynamic determinants of ligand binding and regulation of cyclin-dependent kinase 5 by pathological activator p25 and inhibitory peptide CIP.. Journal of molecular biology. 401(3):478-92.

Swaminathan A, Mao Y, Su G-M, Gou H, Varna AL, He S, M. Wu, Oard D.  2010.  System and Method for Confidentiality-Preserving Rank-Ordered Search. 12/608,724

Shneiderman B.  2010.  Technology-Mediated Social Participation: Deep Science and Extreme Technology. Active Media TechnologyActive Media Technology. 6335:1-4.

Selengut JD, Haft DH.  2010.  Unexpected abundance of coenzyme F(420)-dependent enzymes in Mycobacterium tuberculosis and other actinobacteria.. J Bacteriol. 192(21):5788-98.

Haghpanah Y, desJardins M, others.  2010.  Using a Trust Model in Decision Making for Supply Chain Management. Workshops at the Twenty-Fourth AAAI Conference on Artificial Intelligence. 

Shakarian P, V.S. Subrahmanian, Sapino ML, Hermenegildo M, Schaub T.  2010.  Using Generalized Annotated Programs to Solve Social Network Optimization Problems. ICLP. 

Hicks MW, Foster JS.  2010.  Viewpoint Adapting agile software development methodology toward more efficient management of academic research groups.. Communications of the ACM. 53(10):30-30.

Hansen D, Shneiderman B, Smith M.  2010.  Visualizing Threaded Conversation Networks: Mining Message Boards and Email Lists for Actionable Insights. Active Media TechnologyActive Media Technology. 6335:47-62.

Chetty M, Banks R, Harper R, Regan T, Sellen A, Gkantsidis C, Karagiannis T, Key P.  2010.  Who's Hogging the Bandwidth: The Consequences of Revealing the Invisible in the Home. SIGCHI '10. :659-668.

Blackburn SM, Diwan A, Hauswirth M, Memon AM, Sweeney PF.  2010.  Workshop on experimental evaluation of software and systems in computer science (Evaluate 2010). Proceedings of the ACM international conference companion on Object oriented programming systems languages and applications companion. :291-292.

Vishnoi A, Kryazhimskiy S, Bazykin GA, Hannenhalli S, Plotkin JB.  2010.  Young Proteins Experience More Variable Selection Pressures Than Old Proteins. Genome ResearchGenome Res.. 20(11):1574-1581.

Condon A, Deshpande A, Hellerstein L, Wu N.  2009.  Algorithms for distributional and adversarial pipelined filter ordering problems. ACM Trans. Algorithms. 5(2):24:1?24:34-24:1?24:34.

Han B, Ji L, Lee S, Bhattacharjee B, Miller RR.  2009.  All Bits Are Not Equal - A Study of IEEE 802.11 Communication Bit Errors. INFOCOM 2009, IEEE. :1602-1610.

Hussein ME, Abd-Almageed W.  2009.  Approximate kernel matrix computation on GPUs forlarge scale learning applications. Proceedings of the 23rd international conference on Supercomputing. :511-512.

Albrecht M, Gentry C, Halevi S, Katz J.  2009.  Attacking cryptographic schemes based on "perturbation polynomials". Proceedings of the 16th ACM conference on Computer and communications security. :1-10.

Sims JJ, Haririnia A, Dickinson BC, Fushman D, Cohen RE.  2009.  Avid interactions underlie the Lys63-linked polyubiquitin binding specificities observed for UBA domains. Nature Structural & Molecular Biology. 16(8):883-889.

Han B, Ji L, Lee S, Miller RR, Bhattacharjee B.  2009.  Channel Access Throttling for Improving WLAN QoS. Sensor, Mesh and Ad Hoc Communications and Networks, 2009. SECON '09. 6th Annual IEEE Communications Society Conference on. :1-9.

Han B, Ji L, Lee S, Miller RR, Bhattacharjee B.  2009.  Channel Access Throttling for Overlapping BSS Management. Communications, 2009. ICC '09. IEEE International Conference on. :1-6.

Leon J-C, De Floriani L, Hetroy F.  2009.  Classification of non-manifold singularities from transformations of 2-manifolds. Shape Modeling and Applications, 2009. SMI 2009. IEEE International Conference on. :179-184.

Xu Y, Huang S-B, Ji H, Fermüller C.  2009.  Combining powerful local and global statistics for texture description. IEEE Conference on Computer Vision and Pattern Recognition, 2009. CVPR 2009. :573-580.

Chun J, Grim CJ, Hasan NA, Lee JH, Choi SY, Haley BJ, Taviani E, Jeon YS, Kim DW, Lee JH et al..  2009.  Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proceedings of the National Academy of Sciences. 106(36):15442-15447.

Hussein M, Porikli F, Davis LS.  2009.  A Comprehensive Evaluation Framework and a Comparative Study for Human Detectors. Intelligent Transportation Systems, IEEE Transactions on. 10(3):417-427.

Patel VM, Easley GR, Healy DM, Chellappa R.  2009.  Compressed sensing for Synthetic Aperture Radar imaging. 2009 16th IEEE International Conference on Image Processing (ICIP). :2141-2144.

De Floriani L, Panozzo D, Hui A.  2009.  Computing and visualizing a graph-based decomposition for non-manifold shapes. Graph-Based Representations in Pattern Recognition. :62-71.

Refaey MA, Elsayed KM, Hanafy SM, Davis LS.  2009.  Concurrent transition and shot detection in football videos using Fuzzy Logic. Image Processing (ICIP), 2009 16th IEEE International Conference on. :4341-4344.

Jimmy Lin, Murray GC, Dorr BJ, Haji? J, Pecina P.  2009.  A cost-effective lexical acquisition process for large-scale thesaurus translation. Language resources and evaluation. 43(1):27-40.

Corcoran BJ, Swamy N, Hicks MW.  2009.  Cross-tier, label-based security enforcement for web applications. Proceedings of the 35th SIGMOD international conference on Management of data. :269-282.

Essien K, Vigneau S, Apreleva S, Singh LN, Bartolomei MS, Hannenhalli S.  2009.  CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features. Genome Biology. 10(11):R131-R131.

Hao S, Syed N A, Feamster N, Gray AG, Krasser S.  2009.  Detecting spammers with SNARE: spatio-temporal network-level automatic reputation engine. Proceedings of the 18th conference on USENIX security symposium. :101-118.

Grim CJ, Jaiani E, Whitehouse CA, Janelidze N, Kokashvili T, Tediashvili M, Colwell RR, Huq A.  2009.  Detection of toxigenic Vibrio cholerae O1 in freshwater lakes of the former Soviet Republic of Georgia. Environmental Microbiology Reports. 2(1):2-6.

Khoo Y P, Hicks MW, Foster JS, Sazawal V.  2009.  Directing JavaScript with arrows. Proceedings of the 5th symposium on Dynamic languages. :49-58.

Han B, Kumar VSA, Marathe MV, Parthasarathy S, Srinivasan A.  2009.  Distributed Strategies for Channel Allocation and Scheduling in Software-Defined Radio Networks. IEEE INFOCOM 2009. :1521-1529.

Hansen DL, Rotman D, Bonsignore E, Milic-Frayling N, Rodrigues EM, Smith M, Shneiderman B.  2009.  Do you know the way to SNA?: A process model for analyzing and visualizing social media data University of Maryland Tech Report: HCIL-2009-17. 

Subramanian S, Hicks MW, McKinley KS.  2009.  Dynamic software updates: a VM-centric approach. Proceedings of the 2009 ACM SIGPLAN conference on Programming language design and implementation. :1-12.

Subramanian S, Hicks MW, McKinley KS.  2009.  Dynamic software updates for Java: A VM-centric approach. Proceedings of the ACM Conference on Programming Language Design and Implementation (PLDI). 

Hussein M, Abd-Almageed W.  2009.  Efficient band approximation of Gram matrices for large scale kernel methods on GPUs. Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis. :31:1?31:10-31:1?31:10.

Hayden CM, Hardisty EA, Hicks MW, Foster JS.  2009.  Efficient systematic testing for dynamically updatable software. Proceedings of the 2nd International Workshop on Hot Topics in Software Upgrades. :9-9.

Hayden CM, Hardisty EA, Hicks MW, Foster JS.  2009.  Efficient systematic testing for dynamically updatable software. Proceedings of the 2nd International Workshop on Hot Topics in Software Upgrades. :9:1?9:5-9:1?9:5.

Ge LN, He ZH, Zhuolin Jiang.  2009.  Encryption Algorithm Based on Circle Property. Jisuanji Gongcheng/ Computer Engineering. 35(4):180-182.

Patel VM, Easley GR, Chellappa R, Healy DM.  2009.  Enhancing sparsity using gradients for compressive sensing. Image Processing (ICIP), 2009 16th IEEE International Conference on. :3033-3036.

Putt ME, Hannenhalli S, Lu Y, Haines P, Chandrupatla HR, Morrisey EE, Margulies KB, Cappola TP.  2009.  Evidence for Coregulation of Myocardial Gene Expression by MEF2 and NFAT in Human Heart Failure / CLINICAL PERSPECTIVE. Circulation: Cardiovascular Genetics. 2(3):212-219.

Hannenhalli S, Kaestner KH.  2009.  The evolution of Fox genes and their role in development and disease. Nature reviews. GeneticsNat Rev Genet. 10(4):233-240.

Varna AL, He S, Swaminathan A, M. Wu.  2009.  Fingerprinting Compressed Multimedia Signals. Information Forensics and Security, IEEE Transactions on. 4(3):330-345.

Bonsignore EM, Dunne C, Rotman D, Smith M, Capone T, Hansen DL, Shneiderman B.  2009.  First Steps to Netviz Nirvana: Evaluating Social Network Analysis with NodeXL. International Conference on Computational Science and Engineering, 2009. CSE '09. 4:332-339.

Varadarajan R, Hristidis V, Raschid L, Vidal ME, Ibá\ nez L, Rodríguez-Drumond H.  2009.  Flexible and efficient querying and ranking on hyperlinked data sources. Proceedings of the 12th International Conference on Extending Database Technology: Advances in Database Technology. :553-564.

Shah R, Lu Y, Hinkle CC, McGillicuddy FC, Kim R, Hannenhalli S, Cappola TP, Heffron S, Wang XM, Mehta NN et al..  2009.  Gene Profiling of Human Adipose Tissue During Evoked Inflammation In Vivo. DiabetesDiabetes. 58(10):2211-2219.

Mohammad S, Dorr BJ, Egan M, Hassan A, Muthukrishan P, Qazvinian V, Radev D, Zajic D.  2009.  Generating surveys of scientific paradigms. Proceedings of HLT-NAACL. 

Brettin T S[L A N L, Bruce D C[L A N L, Challacombe J F[L A N L, Detter J C[L A N L, Han C S[L A N L, Munik C[L A N LA, Chertkov O[L A N L, Meincke L[L A N L, Saunders E[L A N L, Choi S Y[SEOUL NATL UNIV et al..  2009.  Genome assortment, not serogroup, defines Vibrio cholerae pandemic strains. Nature. 

Butler S, Hajiaghayi MT, Kleinberg RD, Leighton T.  2009.  Hat guessing games. SIAM review. 51(2):399-413.

He S, Kirovski D, M. Wu.  2009.  High-Fidelity Data Embedding for Image Annotation. Image Processing, IEEE Transactions on. 18(2):429-435.

Druin A, Foss E, Hatley L, Golub E, Guha ML, Fails J, Hutchinson H.  2009.  How children search the internet with keyword interfaces. Proceedings of the 8th International Conference on Interaction Design and Children. :89-96.

Schwartz W R, Kembhavi A, Harwood D, Davis LS.  2009.  Human detection using partial least squares analysis. Computer Vision, 2009 IEEE 12th International Conference on. :24-31.

Froehlich J, Larson E, Campbell T, Haggerty C, Fogarty J, Patel SN.  2009.  HydroSense: infrastructure-mediated single-point sensing of whole-home water activity. Proceedings of the 11th international conference on Ubiquitous computing, September. 

Archer A, Bateni MH, Hajiaghayi MT, Karloff H.  2009.  Improved approximation algorithms for prize-collecting Steiner tree and TSP. 2009 50th Annual IEEE Symposium on Foundations of Computer Science. :427-436.

Huynh TQ, Reggia JA.  2009.  Improving rule extraction from neural networks by modifying hidden layer representations. Neural Networks, 2009. IJCNN 2009. International Joint Conference on. :1316-1321.

Farwell D, Dorr BJ, Habash N, Helmreich S, Hovy E, Green R, Levin L, Miller K, Mitamura T, Rambow O et al..  2009.  Interlingual annotation of multilingual text corpora and FrameNet. Multilingual FrameNets in Computational LexicographyMultilingual FrameNets in Computational Lexicography. 200:287-318.

Easley GR, Patel VM, Healy Jr DM.  2009.  Inverse halftoning using a shearlet representation. Proceedings of SPIE. 7446:74460C-74460C.

Hansen M, Everett L, Singh L, Hannenhalli S.  2009.  Mimosa: mixture model of co-expression to detect modulators of regulatory interaction. Proceedings of the 9th international conference on Algorithms in bioinformatics. :133-144.

ter Hofte H, Jensen K L, Nurmi P, Froehlich J.  2009.  Mobile Living Labs 09: Methods and Tools for Evaluation in the Wild. Proceedings of the 11th International Conference on Human-Computer Interaction with Mobile Devices and Services. :107:1?107:2-107:1?107:2.

Liu R, Hannenhalli S, Bucan M.  2009.  Motifs and cis-regulatory modules mediating the expression of genes co-expressed in presynaptic neurons. Genome Biology. 10(7):R72-R72.

Lin Z, Hua G, Davis LS.  2009.  Multiple instance Feature for robust part-based object detection. Computer Vision and Pattern Recognition, 2009. CVPR 2009. IEEE Conference on. :405-412.

Erman J, Gerber A, Hajiaghayi MT, Pei D, Spatscheck O.  2009.  Network-aware forward caching. Proceedings of the 18th international conference on World wide web. :291-300.

Khondker M, Bhuiyan R A, Yeasmin J, Alam M, Sack BR, Huq A, Colwell RR.  2009.  New records of phytoplankton for Bangladesh. 9. Some rare and a new species. Bangladesh Journal of Plant Taxonomy. 16(1)

Hussein M, Porikli F, Davis LS.  2009.  Object detection via boosted deformable features. Image Processing (ICIP), 2009 16th IEEE International Conference on. :1445-1448.

Papageorge P, McCann J, Hicks MW.  2009.  Passive aggressive measurement with MGRP. SIGCOMM Comput. Commun. Rev.. 39(4):279-290.

Hussein M, Porikli F, Davis LS.  2009.  PERCEPTION AND NAVIGATION FOR AUTONOMOUS VEHICLES. IEEE Transactions on intelligent transportation systems. 10(3):417-427.

Au T-C, Kuter U, Nau DS.  2009.  Planning for Interactions among Autonomous Agents. Programming Multi-Agent Systems. 5442:1-23.

Constantin de Magny G, Long W, Brown CW, Hood RR, Huq A, Murtugudde R, Colwell RR.  2009.  Predicting the distribution of Vibrio spp. in the Chesapeake Bay: a Vibrio cholerae case study. EcoHealth. 6(3):378-389.

Han B, Davis LS.  2009.  Probabilistic fusion-based parameter estimation for visual tracking. Computer Vision and Image Understanding. 113(4):435-445.

Everett L, Vo A, Hannenhalli S.  2009.  PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic Acids ResearchNucleic Acids Research. 37(Database):D66-D71-D66-D71.

Haitner I, Horvitz O, Katz J, Koo CY, Morselli R, Shaltiel R.  2009.  Reducing complexity assumptions for statistically-hiding commitment. Journal of cryptology. 22(3):283-310.

Hedin B, Oard D.  2009.  Replication and automation of expert judgments: Information engineering in legal e-discovery. IEEE International Conference on Systems, Man and Cybernetics, 2009. SMC 2009. :102-107.

Qasim AN, Metkus TS, Tadesse M, Lehrke M, Restine S, Wolfe ML, Hannenhalli S, Cappola T, Rader DJ, Reilly MP.  2009.  Resistin gene variation is associated with systemic inflammation but not plasma adipokine levels, metabolic syndrome or coronary atherosclerosis in nondiabetic Caucasians. Clinical Endocrinology. 70(5):698-705.

Grim CJ, Zo Y-G, Hasan NA, Ali A, Chowdhury WB, Islam A, Rashid MH, Alam M, Morris GJ, Huq A et al..  2009.  RNA Colony Blot Hybridization Method for Enumeration of Culturable Vibrio Cholerae and Vibrio Mimicus Bacteria. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75(17):5439-5444.

Furr M, An J-hoon(D), Foster JS, Hicks MW.  2009.  The ruby intermediate language. SIGPLAN Not.. 44(12):89-98.

Neamtiu I, Hicks MW.  2009.  Safe and timely updates to multi-threaded programs. SIGPLAN Not.. 44(6):13-24.

Kembhavi A, Siddiquie B, Miezianko R, McCloskey S, Davis LS, Schwartz WR, Harwood D, Gupta A, Farrell R, Luo Y et al..  2009.  Scene it or not? incremental multiple kernel learning for object detection Proceedings of the International Conference on Computer Vision. 

Bateni MH, Golab L, Hajiaghayi MT, Karloff H.  2009.  Scheduling to minimize staleness and stretch in real-time data warehouses. Proceedings of the twenty-first annual symposium on Parallelism in algorithms and architectures. :29-38.

Alam M, Chowdhury WB, Bhuiyan NA, Islam A, Hasan NA, Nair BG, Watanabe H, Siddique AK, Huq A, Sack BR et al..  2009.  Serogroup, Virulence, and Genetic Traits of Vibrio Parahaemolyticus in the Estuarine Ecosystem of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75(19):6268-6274.

De Floriani L, Panozzo D, Hui A.  2009.  A set of tools for Representing, Decomposing and Visualizing non manifold Cellular Complexes. DISI-TR-09-06

Patel VM, Easley GR, Healy DM.  2009.  Shearlet-Based Deconvolution. IEEE Transactions on Image Processing. 18(12):2673-2685.

Furr M, An J-hoon(D), Foster JS, Hicks MW.  2009.  Static type inference for Ruby. Proceedings of the 2009 ACM symposium on Applied Computing. :1859-1866.

Zhang N, Wang Q, Ehlinger A, Randles L, Lary JW, Kang Y, Haririnia A, Storaska AJ, Cole JL, Fushman D et al..  2009.  Structure of the S5a:K48-Linked Diubiquitin Complex and Its Interactions with Rpn13. Molecular Cell. 35(3):280-290.

Hopkins JK, Spranklin BW, Gupta SK.  2009.  A survey of snake-inspired robot designs. Bioinspiration & Biomimetics. 4(2):021001-021001.

Habash N, Dorr BJ, Monz C.  2009.  Symbolic-to-statistical hybridization: extending generation-heavy machine translation. Machine Translation. 23(1):23-63.

Shao-fa JZL, Hong-li JXZ.  2009.  Target Tracking Based on Nonparametric Clustering and Multi-Scale Images. JSCUT (Natural Science Edition). 37(1):34-41.

Hayden CM, Hardisty EA, Hicks MW, Foster JS.  2009.  A Testing Based Empirical Study of Dynamic Software Update Safety Restrictions. Technical Reports of the Computer Science Department. 

Furr M, An J-hoon(D), Foster JS, Hicks MW.  2009.  Tests to the left of me, types to the right: how not to get stuck in the middle of a ruby execution. Proceedings for the 1st workshop on Script to Program Evolution. :14-16.

Swamy N, Hicks MW, Bierman GM.  2009.  A theory of typed coercions and its applications. Proceedings of the 14th ACM SIGPLAN international conference on Functional programming. :329-340.

Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.

Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.

Feamster N, Hassan U, Sundaresan S, Valancius V, Johari R, Vazirani V.  2009.  Towards an Internet Connectivity Market. GT-CS-09-01

Phang KY, Foster JS, Hicks MW, Sazawal V.  2009.  Triaging Checklists: a Substitute for a PhD in Static Analysis. Evaluation and Usability of Programming Languages and Tools (PLATEAU) PLATEAU 2009. 

Froehlich J, Dillahunt T, Klasnja P, Mankoff J, Consolvo S, Harrison B, Landay JA.  2009.  UbiGreen: investigating a mobile tool for tracking and supporting green transportation habits. Proceedings of the 27th international conference on Human factors in computing systems. :1043-1052.

Mohammad S, Dorr BJ, Egan M, Hassan A, Muthukrishan P, Qazvinian V, Radev D, Zajic D.  2009.  Using citations to generate surveys of scientific paradigms. Proceedings of Human Language Technologies: The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics. :584-592.

Hierons RM, Krause P, Lüttgen G, Simons AJH, Vilkomir S, Woodward MR, Zedan H, Bogdanov K, Bowen JP, Cleaveland R et al..  2009.  Using formal specifications to support testing. ACM Computing Surveys. 41:1-76.

Swamy N, Hicks MW.  2009.  Verified enforcement of stateful information release policies. SIGPLAN Not.. 43(12):21-31.

Gopalan R, Hong T, Shneier M, Chellappa R.  2009.  Video-based Lane Detection using Boosting Principles. 

Han B, Zhu Y, Comaniciu D, Davis LS.  2009.  Visual Tracking by Continuous Density Propagation in Sequential Bayesian Filtering Framework. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 31(5):919-930.

Jong F D, Oard D, Heeren W, Ordelman R.  2008.  Access to recorded interviews. Journal on Computing and Cultural Heritage. 1:1-27.

Consolvo S, McDonald DW, Toscos T, Chen MY, Froehlich J, Harrison B, Klasnja P, LaMarca A, LeGrand L, Libby R et al..  2008.  Activity sensing in the wild: a field trial of ubifit garden. Proceeding of the twenty-sixth annual SIGCHI conference on Human factors in computing systems. :1797-1806.

Condon E, He A, Cukier M.  2008.  Analysis of Computer Security Incident Data Using Time Series Models. :77-86.

Hochstein L, Basili VR.  2008.  The ASC-Alliance Projects: A Case Study of Large-Scale Parallel Scientific Code Development. Computer. 41(3):50-58.

Huq A, Whitehouse CA, Grim CJ, Alam M, Colwell RR.  2008.  Biofilms in water, its role and impact in human disease transmission. Current Opinion in Biotechnology. 19(3):244-247.

Hill JH, Schmidt DC, Porter A, Slaby JM.  2008.  CiCUTS: Combining System Execution Modeling Tools with Continuous Integration Environments. Engineering of Computer-Based Systems, IEEE International Conference on the. :66-75.

Berthier R, Korman D, Cukier M, Hiltunen M, Vesonder G, Sheleheda D.  2008.  On the Comparison of Network Attack Datasets: An Empirical Analysis. :39-48.

Essien K, Hannenhalli S, Stoeckert CJ.  2008.  Computational Analysis of Constraints on Noncoding Regions, Coding Regions and Gene Expression in Relation to Plasmodium Phenotypic Diversity. PLoS ONEPLoS ONE. 3(9):e3122-e3122.

Mohammad S, Dorr BJ, Hirst G.  2008.  Computing word-pair antonymy. Proceedings of the Conference on Empirical Methods in Natural Language Processing. :982-991.

Neamtiu I, Hicks MW, Foster JS, Pratikakis P.  2008.  Contextual effects for version-consistent dynamic software updating and safe concurrent programming. Proceedings of the 35th annual ACM SIGPLAN-SIGACT symposium on Principles of programming languages. :37-49.

Zo Y-G, Chokesajjawatee N, Arakawa E, Watanabe H, Huq A, Colwell RR.  2008.  Covariability of Vibrio Cholerae Microdiversity and Environmental Parameters. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 74(9):2915-2920.

Elaine Shi, Waters B.  2008.  Delegating Capabilities in Predicate Encryption Systems. Automata, Languages and Programming. 5126:560-578.

Khoo YP, Hicks MW, Foster JS, Sazawal V.  2008.  Directing javascript with arrows (functional pearl). Technical Reports of the Computer Science Department. 

Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KLT et al..  2008.  The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 452(7190):991-996.

Sewell P, Stoyle G, Hicks MW, Bierman G, Wansbrough K.  2008.  Dynamic Rebinding for Marshalling and Update, Via Redex-Time and Destruct-Time Reduction. Journal of Functional Programming. 18(04):437-502.

Ramachandran A, Hao S, Khandelwal H, Feamster N, Vempala S.  2008.  A Dynamic Reputation Service for Spotting Spammers. GT-CS-08-09

Heitzmann A, Palazzi B, Papamanthou C, Tamassia R.  2008.  Effective Visualization of File System Access-Control. Visualization for Computer Security. :18-25.

Heitzmann A, Palazzi B, Papamanthou C, Tamassia R.  2008.  Efficient Integrity Checking of Untrusted Network Storage. StorageSS '08 Proceedings of the 4th ACM International Workshop on Storage Security and Survivability . :43-54.

Hochstein L, Nakamura T, Shull F, Zazworka N, Basili VR, Zelkowitz MV.  2008.  An Environment for Conducting Families of Software Engineering Experiments. Software Development. Volume 74:175-200.

Hannenhalli S.  2008.  Eukaryotic Transcription Factor Binding Sites?modeling and Integrative Search Methods. BioinformaticsBioinformatics. 24(11):1325-1331.

Swamy N, Corcoran BJ, Hicks MW.  2008.  Fable: A Language for Enforcing User-defined Security Policies. IEEE Symposium on Security and Privacy, 2008. SP 2008. :369-383.

Chrun D, Cukier M, Sneeringer G.  2008.  Finding Corrupted Computers Using Imperfect Intrusion Prevention System Event Data. Computer Safety, Reliability, and Security. 5219:221-234.

Deshpande A, Hellerstein L.  2008.  Flow Algorithms for Parallel Query Optimization. IEEE 24th International Conference on Data Engineering, 2008. ICDE 2008. :754-763.

Pratikakis P, Foster JS, Hicks MW, Neamtiu I.  2008.  Formalizing Soundness of Contextual Effects. Theorem Proving in Higher Order LogicsTheorem Proving in Higher Order Logics. 5170:262-277.

Mendonca MG, Maldonado JC, de Oliveira MCF, Carver J, Fabbri CPF, Shull F, Travassos GH, Hohn EN, Basili VR.  2008.  A Framework for Software Engineering Experimental Replications. Engineering of Complex Computer Systems, 2008. ICECCS 2008. 13th IEEE International Conference on. :203-212.

Singh LN, Hannenhalli S.  2008.  Functional Diversification of Paralogous Transcription Factors via Divergence in DNA Binding Site Motif and in Expression. PLoS ONEPLoS ONE. 3(6):e2345-e2345.

Sethupathy P, Giang H, Plotkin JB, Hannenhalli S.  2008.  Genome-Wide Analysis of Natural Selection on Human Cis-Elements. PLoS ONEPLoS ONE. 3(9):e3137-e3137.

Giancarlo R, Hannenhalli S.  2008.  Guest Editors' Introduction to the Special Section on Algorithms in Bioinformatics. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5(4):482-483.

Tikir MM, Hollingsworth J.  2008.  Hardware monitors for dynamic page migration. Journal of Parallel and Distributed Computing. 68(9):1186-1200.

De Floriani L, Hui A, Giannini F.  2008.  Identification of Form Features in Non-Manifold Shapes Through a Decomposition Approach. ASME Conference Proceedings. 2008(48371):293-300.

King D, Hicks B, Hicks MW, Jaeger T.  2008.  Implicit Flows: Can?t Live with ?Em, Can?t Live without ?Em. Information Systems SecurityInformation Systems Security. 5352:56-70.

Hussein M, Porikli F, Davis LS.  2008.  Kernel integral images: A framework for fast non-uniform filtering. Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on. :1-8.

Wan L-B, Pan H, Hannenhalli S, Cheng Y, Ma J, Fedoriw A, Lobanenkov V, Latham KE, Schultz RM, Bartolomei MS.  2008.  Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. Development. 135(16):2729-2738.

Ackermann C, Ray A, Cleaveland R, Heit J, Martin C, Shelton C.  2008.  Model Based Design Verification: A Monitor Based Approach. 2008-01-0741

Srivastava S, Hicks MW, Foster JS, Jenkins P.  2008.  Modular Information Hiding and Type-Safe Linking for C. IEEE Transactions on Software Engineering. 34(3):357-376.

Luo W, Wu M, Huang J.  2008.  Mpeg recompression detection based on block artifacts. Proc. of SPIE Electronic Imaging, Security, Steganography, and Watermarking of Multimedia Contents. 6819

Haririnia A, Verma R, Purohit N, Twarog MZ, Deshaies RJ, Bolon D, Fushman D.  2008.  Mutations in the Hydrophobic Core of Ubiquitin Differentially Affect Its Recognition by Receptor Proteins. Journal of Molecular Biology. 375(4):979-996.

Hermjakob U, Knight K, Daumé H.  2008.  Name translation in statistical machine translation: Learning when to transliterate. Proceedings of ACL-08: HLT. :389-397.

Patel VM, Easley GR, Healy DM.  2008.  A new multiresolution generalized directional filter bank design and application in image enhancement. 15th IEEE International Conference on Image Processing, 2008. ICIP 2008. :2816-2819.

Khondker M, Bhuiyan R A, Yeasmin J, Alam M, Sack BR, Huq A, Colwell RR.  2008.  New records of phytoplankton for Bangladesh. 2. Cryptophyceae and Synurophyceae. Bangladesh Journal of Botany. 36(1)

Khondker M, Bhuiyan R A, Yeasmin J, Alam M, Sack BR, Huq A, Colwell RR.  2008.  New records of phytoplankton for Bangladesh. 5. Euglena, Euglenocapsa. Bangladesh Journal of Plant Taxonomy. 15(1)

Khondker M, Bhuiyan R A, Yeasmin J, Alam M, Sack BR, Huq A, Colwell RR.  2008.  New records of phytoplankton for Bangladesh. 7. Phacus spp.. Bangladesh Journal of Botany. 37(1)

Khondker M, Bhuiyan R A, Yeasmin J, Alam M, Sack BR, Huq A, Colwell RR.  2008.  New records of phytoplankton for Bangladesh. 8. Trachelomonas Ehr. (Euglenophyceae). Bangladesh Journal of Botany. 37(2)

Grim CJ, Taviani E, Alam M, Huq A, Sack BR, Colwell RR.  2008.  Occurrence and Expression of Luminescence in Vibrio Cholerae. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 74(3):708-715.

Dachman-Soled D, Lee HK, Malkin T, Servedio RA, Wan A, Wee H.  2008.  Optimal Cryptographic Hardness of Learning Monotone Functions. Automata, Languages and Programming. :36-47.

Khoo Y P, Foster JS, Hicks MW, Sazawal V.  2008.  Path projection for user-centered static analysis tools. Proceedings of the 8th ACM SIGPLAN-SIGSOFT workshop on Program analysis for software tools and engineering. :57-63.

Hochstein L, Basili VR, Vishkin U, Gilbert J.  2008.  A pilot study to compare programming effort for two parallel programming models. Journal of Systems and Software. 81(11):1920-1930.

Huang Y, Feamster N, Teixeira R.  2008.  Practical issues with using network tomography for fault diagnosis. SIGCOMM Comput. Commun. Rev.. 38(5):53-58.

Pemmaraju S, Srinivasan A.  2008.  The Randomized Coloring Procedure with Symmetry-Breaking. Automata, Languages and ProgrammingAutomata, Languages and Programming. 5125:306-319.

Quinn AJ, Hu C, Arisaka T, Rose A, Bederson BB.  2008.  Readability of scanned books in digital libraries. Proceeding of the twenty-sixth annual SIGCHI conference on Human factors in computing systems. :705-714.

Wang J, Dam G, Yildirim S, Rand W, Wilensky U, Houk JC.  2008.  Reciprocity between the cerebellum and the cerebral cortex: Nonlinear dynamics in microscopic modules for generating voluntary motor commands. Complexity. 14(2):29-45.

Regier JC, Shultz JW, Ganley ARD, Hussey A, Shi D, Ball B, Zwick A, Stajich JE, Cummings MP, Martin JW et al..  2008.  Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Syst Biol. 57(6):920-938.

Plaisant C, Lam S, Shneiderman B, Smith MS, Roseman D, Marchand G, Gillam M, Feied C, Handler J, Rappaport H.  2008.  Searching Electronic Health Records for Temporal Patterns in Patient Histories: A Case Study with Microsoft Amalga. AMIA Annual Symposium ProceedingsAMIA Annu Symp Proc. 2008:601-605.

Stine CO, Alam M, Tang L, Nair BG, Siddique KA, Faruque SM, Huq A, Colwell RR, Sack BR, Morris GJ.  2008.  Seasonal Cholera from Multiple Small Outbreaks, Rural Bangladesh. Emerging Infectious DiseasesEmerg Infect Dis. 14(5):831-833.

Cerqueira GC, Bartholomeu DC, DaRocha WD, Hou L, Freitas-Silva DM, Machado C R, El-Sayed NM, Teixeira SMR.  2008.  Sequence diversity and evolution of multigene families in Trypanosoma cruzi. Molecular and Biochemical Parasitology. 157(1):65-72.

Han B, Comaniciu D, Zhu Y, Davis LS.  2008.  Sequential Kernel Density Approximation and Its Application to Real-Time Visual Tracking. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 30(7):1186-1197.

Fermin DR, Barac A, Lee S, Polster SP, Hannenhalli S, Bergemann TL, Grindle S, Dyke DB, Pagani F, Miller LW et al..  2008.  Sex and Age Dimorphism of Myocardial Gene Expression in Nonischemic Human Heart Failure. Circulation: Cardiovascular Genetics. 1(2):117-125.

Hopkins JK, Spranklin BW, Gupta SK.  2008.  System-Level Optimization Model for a Snake-Inspired Robot Based on a Rectilinear Gait. :913-924.

Hackner DR, Memon AM.  2008.  Test case generator for GUITAR. Companion of the 30th international conference on Software engineering. :959-960.

Sethupathy P, Hannenhalli S.  2008.  A Tutorial of the Poisson Random Field Model in Population Genetics. Advances in Bioinformatics. 2008:1-9.

Tran S, Lin Z, Harwood D, Davis LS.  2008.  UMD_VDT, an Integration of Detection and Tracking Methods for Multiple Human Tracking. Multimodal Technologies for Perception of Humans. :179-190.

Basili VR, Carver JC, Cruzes D, Hochstein LM, Hollingsworth J, Shull F, Zelkowitz MV.  2008.  Understanding the High-Performance-Computing Community: A Software Engineer's Perspective. Software, IEEE. 25(4):29-36.

Oard D, He D, Wang J.  2008.  User-assisted query translation for interactive cross-language information retrieval. Information Processing & Management. 44(1):181-211.

Klasnja P, Harrison BL, LeGrand L, LaMarca A, Froehlich J, Hudson SE.  2008.  Using wearable sensors and real time inference to understand human recall of routine activities. Proceedings of the 10th international conference on Ubiquitous computing. :154-163.

Swamy N, Hicks MW.  2008.  Verified enforcement of automaton-based information release policies. Proceedings of the 2008 Workshop on Programming Languages and Analysis for Security. ACM Press. 

Chen C-houh, Härdle W, Unwin A, Jank W, Shmueli G, Plaisant C, Shneiderman B.  2008.  Visualizing Functional Data with an Application to eBay?s Online Auctions. Handbook of Data VisualizationHandbook of Data Visualization. :873-898.

He S, M. Wu.  2007.  Adaptive Detection for Group-Based Multimedia Fingerprinting. Signal Processing Letters, IEEE. 14(12):964-967.

Varna AL, He S, Swaminathan A, M. Wu.  2007.  Analysis of Nonlinear Collusion Attacks on Fingerprinting Systems for Compressed Multimedia. Image Processing, 2007. ICIP 2007. IEEE International Conference on. 2:II-133-II-136-II-133-II-136.

Hicks MW.  2007.  Analyzing information flow. Conference on Programming Language Design and Implementation: Proceedings of the 2007 workshop on Programming languages and analysis for security. 

Srivastava S, Hicks MW, Foster JS.  2007.  Appendix to CMod: Modular Information Hiding and Type-Safe Linking for C. Technical Reports of the Computer Science Department. 

Condon E, Cukier M, He T.  2007.  Applying Software Reliability Models on Security Incidents. :159-168.

Petroni, Jr. NL, Hicks MW.  2007.  Automated detection of persistent kernel control-flow attacks. Proceedings of the 14th ACM conference on Computer and communications security. :103-115.

Tabatabaee V, Hollingsworth J.  2007.  Automatic software interference detection in parallel applications. Proceedings of the 2007 ACM/IEEE conference on Supercomputing. :14:1?14:12-14:1?14:12.

Lee S, Wang TD, Hashmi N, Cummings MP.  2007.  Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences. Future Generation Comp Syst. 23(3):497-509.

Hajiaghayi MT, Mirrokni SV, Saberi A, Bahl P, Jain K, Qiu L.  2007.  Cell breathing in wireless LANs: Algorithms and evaluation. IEEE Transactions on Mobile Computing. 6(2):164-178.

Hammel M, Sfyroera G, Pyrpassopoulos S, Ricklin D, Ramyar KX, Pop M, Jin Z, Lambris JD, Geisbrecht BV.  2007.  Characterization of Ehp, a Secreted Complement Inhibitory Protein from Staphylococcus aureus. Journal of Biological Chemistry. 282(41):30051-30061.

Boneh D, Canetti R, Halevi S, Katz J.  2007.  Chosen-ciphertext security from identity-based encryption. SIAM Journal on Computing. 36(5):1301-1328.

He S, Kirovski D, M. Wu.  2007.  Colluding Fingerprinted Video using the Gradient Attack. Acoustics, Speech and Signal Processing, 2007. ICASSP 2007. IEEE International Conference on. 2:II-161-II-164-II-161-II-164.

He S, M. Wu.  2007.  Collusion-Resistant Dynamic Fingerprinting for Multimedia. Acoustics, Speech and Signal Processing, 2007. ICASSP 2007. IEEE International Conference on. 2:II-289-II-292-II-289-II-292.

Varna AL, He S, Swaminathan A, M. Wu, Lu H, Lu Z.  2007.  Collusion-Resistant Fingerprinting for Compressed Multimedia Signals. Acoustics, Speech and Signal Processing, 2007. ICASSP 2007. IEEE International Conference on. 2:II-165-II-168-II-165-II-168.

He S, M. Wu.  2007.  Collusion-Resistant Video Fingerprinting for Large User Group. Information Forensics and Security, IEEE Transactions on. 2(4):697-709.

Corcoran BJ, Swamy N, Hicks MW.  2007.  Combining provenance and security policies in a web-based document management system. On-line Proceedings of the Workshop on Principles of Provenance (PrOPr). 

Leparc GG, Mitra RD, Vardhanabhuti S, Wang J, Hannenhalli S, Smit S, Widmann J, Knight R, Wu S, Zhang Y et al..  2007.  COMPUTATIONAL BIOLOGY. Nucleic acids research. 35(9-12):3163-3163.

Hazay C, Katz J, Koo CY, Lindell Y.  2007.  Concurrently-secure blind signatures without random oracles or setup assumptions. Theory of Cryptography. :323-341.

Consolvo S, Harrison B, Smith I, Chen MY, Everitt K, Froehlich J, Landay JA.  2007.  Conducting In Situ Evaluations for and With Ubiquitous Computing Technologies. International Journal of Human-Computer Interaction. 22(1-2):103-118.

Swaminathan A, Mao Y, Su G-M, Gou H, Varna AL, He S, M. Wu, Oard D.  2007.  Confidentiality-preserving rank-ordered search. Proceedings of the 2007 ACM workshop on Storage security and survivability. :7-12.

Balazinska M, Deshpande A, Franklin MJ, Gibbons PB, Gray J, Hansen M, Liebhold M, Nath S, Szalay A, Tao V.  2007.  Data Management in the Worldwide Sensor Web. IEEE Pervasive Computing. 6(2):30-40.

Sen M, Corretjer I, Haim F, Saha S, Schlessman J, Lv T, Bhattacharyya SS, Wolf W.  2007.  Dataflow-based mapping of computer vision algorithms onto FPGAs. EURASIP Journal on Embedded Systems. 2007(1):29-29.

Jim T, Swamy N, Hicks MW.  2007.  Defeating script injection attacks with browser-enforced embedded policies. Proceedings of the 16th international conference on World Wide Web. :601-610.

Huang Y, Feamster N, Lakhina A, Xu J(J).  2007.  Diagnosing network disruptions with network-wide analysis. SIGMETRICS Perform. Eval. Rev.. 35(1):61-72.

Hannuksela J, Sangi P, Heikkila J, Liu X, Doermann D.  2007.  Document Image Mosaicing with Mobile Phones. International Conference on Image Analysis and Processing (ICIAP'07). :1-8.

Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D et al..  2007.  Draft Genome of the Filarial Nematode Parasite Brugia Malayi. Science. 317(5845):1756-1760.

Hsu CJ, Ko MY, Bhattacharyya SS, Ramasubbu S, Pino JL.  2007.  Efficient simulation of critical synchronous dataflow graphs. ACM Transactions on Design Automation of Electronic Systems (TODAES). 12(3):1-28.

Hesse BW, Shneiderman B.  2007.  eHealth Research from the User?s Perspective. American Journal of Preventive Medicine. 32(5, Supplement):S97-S103-S97-S103.

Hochstein L, Nakamura T, Shull F, Zazworka N, Voelp M, Zelkowitz MV, Basili VR.  2007.  An Environment of Conducting Families of Software Engineering Experiments. 

Hannenhalli S.  2007.  Eukaryotic Transcriptional Regulation: Signals, Interactions, and Modules. Computational genomics: current methods. :21-21.

Komlodi A, Hou W, Preece J, Druin A, Golub E, Alburo J, Liao S, Elkiss A, Resnik P.  2007.  Evaluating a cross-cultural children?s online book community: Lessons learned for sociability, usability, and cultural exchange. Interacting with Computers. 19(4):494-511.

Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.

Canetti R, Halevi S, Katz J.  2007.  A forward-secure public-key encryption scheme. Journal of Cryptology. 20(3):265-294.

Zhang Y, Rath N, Hannenhalli S, Wang Z, Cappola T, Kimura S, Atochina-Vasserman E, Lu M M, Beers MF, Morrisey EE.  2007.  GATA and Nkx factors synergistically regulate tissue-specific gene expression and development in vivo. Development. 134(1):189-198.

Yang S, Wang K, Valladares O, Hannenhalli S, Bucan M.  2007.  Genome-wide expression profiling and bioinformatics analysis of diurnally regulated genes in the mouse prefrontal cortex. Genome Biology. 8(11):R247-R247.

Kientz JA, Arriaga RI, Chetty M, Hayes GR, Richardson J, Patel SN, Abowd GD.  2007.  Grow and Know: Understanding Record-keeping Needs for Tracking the Development of Young Children. SIGCHI '07. :1351-1360.

Anderson ML, Schmill M, Oates T, Perlis D, Josyula D, Wright D, Human SWTDN, Metacognition L, Fults S, Josyula DP.  2007.  Hood College, Master of Business Administration, 2005 Hood College, Master of Science (Computer Science), 2001 Hood College, Bachelor of Science (Computer Science), 1998 Frederick Community College, Associate in Arts (Business Administration), 1993. Proceedings of the Workshop on Metareasoning in Agent-Based Systems. 

Yu Y, Harwood D, Yoon K, Davis LS.  2007.  Human appearance modeling for matching across video sequences. Machine Vision and Applications. 18(3):139-149.

Hussein M, Varshney A, Davis LS.  2007.  On implementing graph cuts on cuda. First Workshop on General Purpose Processing on Graphics Processing Units. 

Foster JS, Hicks MW, Pugh W.  2007.  Improving software quality with static analysis. Proceedings of the 7th ACM SIGPLAN-SIGSOFT workshop on Program analysis for software tools and engineering. :83-84.

Froehlich J, Chen MY, Consolvo S, Harrison B, Landay JA.  2007.  Increasing the breadth: applying sensors, inference and self-report in field studies with the MyExperience tool. Proceedings of the 1st international workshop on System evaluation for mobile platforms. :27-27.

Su G-M, Han Z, M. Wu, Liu KJR.  2007.  Joint Uplink and Downlink Optimization for Real-Time Multiuser Video Streaming Over WLANs. Selected Topics in Signal Processing, IEEE Journal of. 1(2):280-294.

Balkan AO, Horak MN, Qu G, Vishkin U.  2007.  Layout-Accurate Design and Implementation of a High-Throughput Interconnection Network for Single-Chip Parallel Processing. High-Performance Interconnects, 2007. HOTI 2007. 15th Annual IEEE Symposium on. :21-28.

Elman H, Howle VE, Shadid J, Silvester D, Tuminaro R.  2007.  Least squares preconditioners for stabilized discretizations of the Navier-Stokes equations. SIAM J. Sci. Comput. 30(1):290-311.

Haririnia A, D?Onofrio M, Fushman D.  2007.  Mapping the Interactions between Lys48 and Lys63-Linked Di-ubiquitins and a Ubiquitin-Interacting Motif of S5a. Journal of Molecular Biology. 368(3):753-766.

Easley GR, Patel VM, Healy Jr DM.  2007.  An M-channel directional filter bank compatible with the contourlet and shearlet frequency tiling. Proceedings of SPIE. 6701:67010C-67010C.

Wang J, Ungar L, Tseng H, Hannenhalli S.  2007.  MetaProm: a neural network based meta-predictor for alternative human promoter prediction. BMC Genomics. 8(1):374-374.

Stoyle G, Hicks MW, Bierman G, Sewell P, Neamtiu I.  2007.  Mutatis Mutandis: Safe and predictable dynamic software updating. ACM Trans. Program. Lang. Syst.. 29(4)

Froehlich J, Chen MY, Consolvo S, Harrison B, Landay JA.  2007.  MyExperience: a system for in situ tracing and capturing of user feedback on mobile phones. Proceedings of the 5th international conference on Mobile systems, applications and services. :57-70.

Khondker M, Bhuiyan R A, Yeasmin J, Alam M, Sack BR, Huq A, Colwell RR.  2007.  New records of phytoplankton for Bangladesh. 3. Volvocales. Bangladesh Journal of Plant Taxonomy. 14(1)

Khondker M, Bhuiyan R A, Yeasim J, Alam M, Sack BR, Huq A, Colwell RR.  2007.  New records of phytoplankton for Bangladesh. 4. Chlorococcales. Bangladesh Journal of Plant Taxonomy. 14(2)

Hajiaghayi MT, Kleinberg RD, R\äcke H, Leighton T.  2007.  Oblivious routing on node-capacitated and directed graphs. ACM Transactions on Algorithms (TALG). 3(4):51?es-51?es.

Alameh R, Zazworka N, Hollingsworth J.  2007.  Performance Measurement of Novice HPC Programmers Code. Proceedings of the 3rd International Workshop on Software Engineering for High Performance Computing Applications. :3?-3?.

Parno B, Wendlandt D, Elaine Shi, Perrig A, Maggs B, Hu Y-C.  2007.  Portcullis: protecting connection setup from denial-of-capability attacks. :289-300.

Vardhanabhuti S, Wang J, Hannenhalli S.  2007.  Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation. Nucleic Acids Research. 35(10):3203-3213.

Hajiaghayi MT, Immorlica N, Mirrokni VS.  2007.  Power optimization in fault-tolerant topology control algorithms for wireless multi-hop networks. IEEE/ACM Transactions on Networking (TON). 15(6):1345-1358.

Hua S, Qu G, Bhattacharyya SS.  2007.  Probabilistic design of multimedia embedded systems. ACM Transactions on Embedded Computing Systems (TECS). 6(3):15?es-15?es.

Han B, Joo S-W, Davis LS.  2007.  Probabilistic Fusion Tracking Using Mixture Kernel-Based Bayesian Filtering. Computer Vision, 2007. ICCV 2007. IEEE 11th International Conference on. :1-8.

Hung E, Getoor L, V.S. Subrahmanian.  2007.  Probabilistic interval XML. ACM Transactions on Computational Logic (TOCL). 8(4)

Srinivasan A.  2007.  Randomized Algorithms and Probabilistic Analysis in Wireless Networking. Stochastic Algorithms: Foundations and ApplicationsStochastic Algorithms: Foundations and Applications. 4665:54-57.

Ramanathan N, Chellappa R.  2007.  Recognizing Faces Across Age Progression. Face Biometrics for Personal IdentificationFace Biometrics for Personal Identification. :27-42.

Coutard F|[ccedil]|ois, Crassous P, Droguet M|[euml]|l, Gobin E, Colwell RR, Pommepuy M, Hervio-Heath D.  2007.  Recovery in culture of viable but nonculturable Vibrio parahaemolyticus: regrowth or resuscitation? The ISME Journal. 1(2):111-120.

Demaine ED, Ghodsi M, Hajiaghayi MT, Sayedi-Roshkhar AS, Zadimoghaddam M.  2007.  Scheduling to minimize gaps and power consumption. Proceedings of the nineteenth annual ACM symposium on Parallel algorithms and architectures. :46-54.

Haas BJ, Berriman M, Hirai H, Cerqueira GG, LoVerde PT, El-Sayed NM.  2007.  Schistosoma mansoni genome: Closing in on a final gene set. Experimental Parasitology. 117(3):225-228.

De Floriani L, Hui A, Papaleo L, Huang M, Hendler J.  2007.  A semantic web environment for digital shapes understanding. Proceedings of the semantic and digital media technologies 2nd international conference on Semantic Multimedia. :226-239.

Shahri HH, Hendler JA, Porter A.  2007.  Software configuration management using ontologies. 3rd International Workshop on Semantic Web Enabled Software Engineering (SWESE 2007), Innsubruk, Austria. 

Mount SM, Gotea V, Lin C-F, Hernandez K, Maka?owski W.  2007.  Spliceosomal small nuclear RNA genes in 11 insect genomes. RNARNA. 13(1):5-14.

Hutchinson HB, Druin A, Bederson BB.  2007.  Supporting elementary-age children's searching and browsing: Design and evaluation using the international children's digital library. Journal of the American Society for Information Science and Technology. 58(11):1618-1630.

RodrIGuez A, Grushin A, Reggia JA, HAUPTMAN AMI, SIPPER M, PAN Z, Reggia JA, GAO D, DARABOS C, GIACOBINI M et al..  2007.  Swarm Intelligence Systems Using Guided Self-Organization for Collective Problem Solving. Advances in Complex Systems. 10(1):5-34.

Hobson S P, Dorr BJ, Monz C, Schwartz R.  2007.  Task-based evaluation of text summarization using Relevance Prediction. Information Processing & Management. 43(6):1482-1499.

Haran M, Karr A, Last M, Orso A, Porter A, Sanil A, Fouch? S.  2007.  Techniques for Classifying Executions of Deployed Software to Support Software Engineering Tasks. IEEE Transactions on Software Engineering. 33(5):287-304.

Hui A, De Floriani L.  2007.  Topological Decompositions for 3D Non-manifold Simplicial Shapes. CS-TR-4855

Hicks MW, Swamy N, Tsang S.  2007.  Toward Specifying and Validating Cross-Domain Policies. Technical Reports from UMIACS. 

Papaleo L, De Floriani L, Hendler J, Hui A.  2007.  Towards a semantic web system for understanding real world representations. Proceedings of the Tenth International Conference on Computer Graphics and Artificial Intelligence. 

Singh LN, Wang L-S, Hannenhalli S.  2007.  TREMOR?a tool for retrieving transcriptional modules by incorporating motif covariance. Nucleic Acids Research. 35(21):7360-7371.

Hui A, De Floriani L.  2007.  A two-level topological decomposition for non-manifold simplicial shapes. Proceedings of the 2007 ACM symposium on Solid and physical modeling. :355-360.

Chaiyanan S, Chaiyanan S, Grim C, Maugel T, Huq A, Colwell RR.  2007.  Ultrastructure of coccoid viable but non?culturable Vibrio cholerae. Environmental Microbiology. 9(2):393-402.

Horvitz O, Katz J.  2007.  Universally-composable two-party computation in two rounds. Proceedings of the 27th annual international cryptology conference on Advances in cryptology. :111-129.

Tanin E, Harwood A, Samet H.  2007.  Using a distributed quadtree index in peer-to-peer networks. The VLDB Journal. 16(2):165-178.

Minkah N, Hwang Y, Perry K, Van Duyne GD, Hendrickson R, Lefkowitz EJ, Hannenhalli S, Bushman FD.  2007.  Variola virus topoisomerase: DNA cleavage specificity and distribution of sites in Poxvirus genomes. Virology. 365(1):60-69.

Swamy N, Hicks MW, Tsang S.  2007.  Verified Enforcement of Security Policies for Cross-Domain Information Flows. IEEE Military Communications Conference, 2007. MILCOM 2007. :1-7.

Alam M, Sultana M, Nair GB, Siddique AK, Hasan NA, Sack RB, Sack DA, Ahmed KU, Sadique A, Watanabe H et al..  2007.  Viable but nonculturable Vibrio cholerae O1 in biofilms in the aquatic environment and their role in cholera transmission. Proceedings of the National Academy of Sciences. 104(45):17801-17801.

Meyers A, Fang AC, Ferro L, Kübler S, Jia-Lin T, Palmer M, Poesio M, Dolbey A, Schuler KK, Loper E et al..  2006.  Annotation compatibility working group report. Proceedings of the Workshop on Frontiers in Linguistically Annotated Corpora 2006. :38-53.

Yoon K, Harwood D, Davis LS.  2006.  Appearance-based person recognition using color/path-length profile. Journal of Visual Communication and Image Representation. 17(3):605-622.

Papamanthou C, Tollis IG.  2006.  Applications of Parameterized st-Orientations in Graph Drawing Algorithms. Graph Drawing. :355-367.

Chu D, Deshpande A, Hellerstein JM, Hong W.  2006.  Approximate Data Collection in Sensor Networks using Probabilistic Models. Proceedings of the 22nd International Conference on Data Engineering, 2006. ICDE '06. :48-48.

Hovemeyer D, Pugh W, Spacco J.  2006.  Atomic instructions in java. ECOOP 2002?Object-Oriented Programming. :5-16.

Hendler J, Nau DS, Parsia B, Sirin E, Wu D.  2006.  Automatic web services composition using Shop2. 

Elman H, Howle VE, Shadid J, Shuttleworth R, Tuminaro R.  2006.  Block preconditioners based on approximate commutators. SIAM Journal on Scientific Computing. 27(5):1651-1668.

Tanin E, Harwood A, Samet H, Nayar D, Nutanong S.  2006.  Building and querying a P2P virtual world. Geoinformatica. 10(1):91-116.

Habash N, Dorr BJ, Monz C.  2006.  Challenges in building an Arabic-English GHMT system with SMT components. Proceedings of the 11th Annual Conference of the European Association for Machine Translation (EAMT-2006). :56-65.

Demaine ED, Hajiaghayi MT, Feige U, Salavatipour MR.  2006.  Combination can be hard: Approximability of the unique coverage problem. Proceedings of the seventeenth annual ACM-SIAM symposium on Discrete algorithm. :162-171.

Campbell MA, Haas BJ, Hamilton JP, Mount SM, Buell RC.  2006.  Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. BMC Genomics. 7(1):327-327.

Corretjer I, Hsu C, Bhattacharyya SS.  2006.  Configuration and representation of large-scale dataflow graphs using the dataflow interchange format. Proceedings of the IEEE Workshop on Signal Processing Systems, Banff, Canada. :10-15.

Evans P, Donahue G, Hannenhalli S.  2006.  Conservation Patterns in cis-Elements Reveal Compensatory Mutations. Comparative GenomicsComparative Genomics. 4205:186-199.

Pratikakis P, Foster JS, Hicks MW.  2006.  Context-sensitive correlation analysis for detecting races. Proceedings of the ACM Conference on Programming Language Design and Implementation (PLDI). :320-331.

Shneiderman B, Fischer G, Czerwinski M, Resnick M, Myers B, Candy L, Edmonds E, Eisenberg M, Giaccardi E, Hewett T et al..  2006.  Creativity Support Tools: Report From a U.S. National Science Foundation Sponsored Workshop. International Journal of Human-Computer Interaction. 20(2):61-77.

Oard D, Demner-Fushman D, Haji? J, Ramabhadran B, Gustman S, Byrne W, Soergel D, Dorr BJ, Resnik P, Picheny M.  2006.  Cross-Language Access to Recorded Speech in the MALACH Project. Text, Speech and DialogueText, Speech and Dialogue. 2448:197-212.

Hansen P C, Nagy JG, O'Leary DP.  2006.  Deblurring Images: Matrices, Spectra, and Filtering. 

Hui A, Vaczlavik L, De Floriani L.  2006.  A decomposition-based representation for 3D simplicial complexes. Proceedings of the fourth Eurographics symposium on Geometry processing. :101-110.

Everett L, Wang L-S, Hannenhalli S.  2006.  Dense Subgraph Computation Via Stochastic Search: Application to Detect Transcriptional Modules. BioinformaticsBioinformatics. 22(14):e117-e123-e117-e123.

Huq A, Grim C, Colwell RR, Nair BG.  2006.  Detection, Isolation, and Identification of Vibrio cholerae from the Environment. Current Protocols in MicrobiologyCurrent Protocols in Microbiology. :6A.5.1-6A.5.38-6A.5.1-6A.5.38.

Keeley MB, Wood MA, Isiegas C, Stein J, Hellman K, Hannenhalli S, Abel T.  2006.  Differential Transcriptional Response to Nonassociative and Associative Components of Classical Fear Conditioning in the Amygdala and Hippocampus. Learning & MemoryLearn. Mem.. 13(2):135-142.

De Floriani L, Hui A.  2006.  A Dimension-Independent Representation for Multiresolution Nonmanifold Meshes. Journal of Computing and Information Science in Engineering. 6(4):397-404.

Hui A, De Floriani L.  2006.  A dimension-independent simplicial data structure for non-manifold shapes. CS-TR-4794

Rand W, Riolo R, Holland JH.  2006.  The effect of crossover on the behavior of the GA in dynamic environments: a case study using the shaky ladder hyperplane-defined functions. Proceedings of the 8th annual conference on Genetic and evolutionary computation. :1289-1296.

Alam M, Sadique A, Bhuiyan NA, Nair GB, Siddique AK, Sack DA, Ahsan S, Huq A, Sack RB, Colwell RR et al..  2006.  Effect of transport at ambient temperature on detection and isolation of Vibrio cholerae from environmental samples. Applied and environmental microbiology. 72(3):2185-2190.

Hsu CJ, Ramasubbu S, Ko MY, Pino JL, Bhattacharyya SS.  2006.  Efficient simulation of critical synchronous dataflow graphs. Proceedings of the 43rd annual Design Automation Conference. :893-898.

Hochstein L, Basili VR.  2006.  An empirical study to compare two parallel programming models. Proceedings of the eighteenth annual ACM symposium on Parallelism in algorithms and architectures. :114-114.

Hua S, Qu G, Bhattacharyya SS.  2006.  Energy-efficient embedded software implementation on multiprocessor system-on-chip with multiple voltages. ACM Transactions on Embedded Computing Systems (TECS). 5(2):321-341.

Bhattacharya I, Getoor L.  2006.  Entity Resolution in Graphs. Mining Graph DataMining Graph Data. :311-344.

Hutchinson HB, Bederson BB, Druin A.  2006.  The evolution of the international children's digital library searching and browsing interface. Proceedings of the 2006 conference on Interaction design and children. :105-112.

Pratikakis P, Foster JS, Hicks MW.  2006.  Existential Label Flow Inference Via CFL Reachability. Static AnalysisStatic Analysis. 4134:88-106.

Hochstein L, Nakamura T, Basili VR, Asgari S, Zelkowitz MV, Hollingsworth J, Shull F, Carver J, Voelp M, Zazworka N et al..  2006.  Experiments to understand HPC time to development. CTWatch Quarterly. 

Swaminathan A, He S, Wu M.  2006.  Exploring QIM-based anti-collusion fingerprinting for multimedia. Proceedings of SPIE. 6072:698-709.

Haibin G A, Agarwal G, Ling H, Jacobs DW, Shirdhonkar S, Kress JW, Russell R, Belhumeur P, Dixit A, Feiner S et al..  2006.  First Steps Toward an Electronic Field Guide for Plants. Taxon. 55:597-610.

Condon A, Deshpande A, Hellerstein L, Wu N.  2006.  Flow algorithms for two pipelined filter ordering problems. Proceedings of the twenty-fifth ACM SIGMOD-SIGACT-SIGART symposium on Principles of database systems. :193-202.

Ross DA, Hannenhalli S, Tobias JW, Cooch N, Shiekhattar R, Kadesch T.  2006.  Functional Analysis of Hes-1 in Preadipocytes. Molecular EndocrinologyMolecular Endocrinology. 20(3):698-705.

Lee CH, Hao X, Varshney A.  2006.  Geometry-dependent lighting. Visualization and Computer Graphics, IEEE Transactions on. 12(2):197-207.

Hao X, Varshney A.  2006.  Geometry-guided computation of 3D electrostatics for large biomolecules. Computer Aided Geometric Design. 23(6):545-557.

desJardins M, Bulka B, Carr R, Hunt A, Rathod P, Rheingans P.  2006.  Heuristic search and information visualization methods for school redistricting. Proceedings of the 18th conference on Innovative applications of artificial intelligence - Volume 2. :1774-1781.

Lee I, Pappas GJ, Cleaveland R, Hatcliff J, Krogh BH, Lee P, Rubin H, Sha L.  2006.  High-confidence medical device software and systems. Computer. 39(4):33-38.

Hannenhalli S, Middleton RP, Levy S, Perroud B, Holzwarth JA, McDonald K, Hannah SS.  2006.  Identification and cross-species comparison of canine osteoarthritic gene regulatory cis-elements. Osteoarthritis and Cartilage. 14(8):830-838.

Nakamura T, Hochstein L, Basili VR.  2006.  Identifying domain-specific defect classes using inspections and change history. Proceedings of the 2006 ACM/IEEE international symposium on Empirical software engineering. :346-355.

Gandhi R, Halperin E, Khuller S, Kortsarz G, Srinivasan A.  2006.  An improved approximation algorithm for vertex cover with hard capacities. Journal of Computer and System Sciences. 72(1):16-33.

Hajiaghayi MT, Kleinberg R, Leighton T.  2006.  Improved lower and upper bounds for universal TSP in planar metrics. Proceedings of the seventeenth annual ACM-SIAM symposium on Discrete algorithm. :649-658.

Bavier A, Feamster N, Huang M, Peterson L, Rexford J.  2006.  In VINI veritas: realistic and controlled network experimentation. SIGCOMM Comput. Commun. Rev.. 36(4):3-14.

Marchionini G, Haas S, Plaisant C, Shneiderman B.  2006.  Integrating data and interfaces to enhance understanding of government statistics: toward the national statistical knowledge network project briefing. Proceedings of 7th Annual International Conference on Digital Libraries (DG06). :21-24.

Wang L-S, Jensen S, Hannenhalli S.  2006.  An Interaction-Dependent Model for Transcription Factor Binding. Systems Biology and Regulatory GenomicsSystems Biology and Regulatory Genomics. 4023:225-234.

Hannenhalli S.  2006.  Invited Talk: Deciphering Gene Regulatory Networks by in silico approaches. 6th International Workshop on Data Mining in Bioinformatics (BIOKDD06). :31-31.

He S, M. Wu.  2006.  Joint coding and embedding techniques for MultimediaFingerprinting. Information Forensics and Security, IEEE Transactions on. 1(2):231-247.

Erickson J, Har-Peled S, Mount D.  2006.  On the Least Median Square Problem. Discrete & Computational Geometry. 36(4):593-607.

Murray GC, Dorr BJ, Jimmy Lin, Haji? J, Pecina P.  2006.  Leveraging recurrent phrase structure in large-scale ontology translation. Proceedings of the 11th Annual Conference of the European Association for Machine Translation. 

Murray CG, Dorr BJ, Jimmy Lin, Haji? J, Pecina P.  2006.  Leveraging reusability: cost-effective lexical acquisition for large-scale ontology translation. Proceedings of the 21st International Conference on Computational Linguistics and the 44th annual meeting of the Association for Computational Linguistics. :945-952.

Hicks MW, Foster JS, Pratikakis P.  2006.  Lock inference for atomic sections. Proceedings of the First ACM SIGPLAN Workshop on Languages, Compilers, and Hardware Support for Transactional Computing. 

Pratikakis P, Foster JS, Hicks MW.  2006.  LOCKSMITH: context-sensitive correlation analysis for race detection. SIGPLAN Not.. 41(6):320-331.

Dorr BJ, Hovy E, Levin L.  2006.  Machine Translation: Interlingual Methods. Encyclopedia of Language & Linguistics (Second Edition)Encyclopedia of Language & Linguistics (Second Edition). :383-394.

Wang J, Hannenhalli S.  2006.  A mammalian promoter model links cis elements to genetic networks. Biochemical and Biophysical Research Communications. 347(1):166-177.

Swamy N, Hicks MW, Tse S, Zdancewic S.  2006.  Managing policy updates in security-typed languages. 19th IEEE Computer Security Foundations Workshop, 2006. :13pp.-216-13pp.-216.

Gouker R, Gupta SK, Bruck H, Holzschuh T.  2006.  Manufacturing of multi-material compliant mechanisms using multi-material molding. The International Journal of Advanced Manufacturing Technology. 30(11):1049-1075.

Haim F, Sen M, Ko D-I, Bhattacharyya SS, Wolf W.  2006.  Mapping Multimedia Applications Onto Configurable Hardware With Parameterized Cyclo-Static Dataflow Graphs. Acoustics, Speech and Signal Processing, 2006. ICASSP 2006 Proceedings. 2006 IEEE International Conference on. 3:III-III.

Hemaraj Y, Sen M, Shekhar R, Bhattacharyya SS.  2006.  Model-based mapping of image registration applications onto configurable hardware. Signals, Systems and Computers, 2006. ACSSC'06. Fortieth Asilomar Conference on. :1453-1457.

Saha S, Shen C-C, Hsu C-J, Aggarwal G, Veeraraghavan A, Sussman A, Bhattacharyya SS.  2006.  Model-based OpenMP implementation of a 3D facial pose tracking system. 2006 International Conference on Parallel Processing Workshops, 2006. ICPP 2006 Workshops. :8pp.-73-8pp.-73.

Han Z, Su G-M, Kwasinski A, M. Wu, Liu KJR.  2006.  Multiuser distortion management of layered video over resource limited downlink multicode-CDMA. Wireless Communications, IEEE Transactions on. 5(11):3056-3067.

Shet V, Harwood D, Davis LS.  2006.  Multivalued default logic for identity maintenance in visual surveillance. Computer Vision?ECCV 2006. :119-132.

Buck BR, Hollingsworth J.  2006.  A New Hardware Monitor Design to Measure Data Structure-Specific Cache Eviction Information. International Journal of High Performance Computing Applications. 20(3):353-363.

Hajiaghayi MT, Kleinberg RD, Leighton T, R\äcke H.  2006.  New lower bounds for oblivious routing in undirected graphs. Proceedings of the seventeenth annual ACM-SIAM symposium on Discrete algorithm. :918-927.

Bakay M, Wang Z, Melcon G, Schiltz L, Xuan J, Zhao P, Sartorelli V, Seo J, Pegoraro E, Angelini C et al..  2006.  Nuclear Envelope Dystrophies Show a Transcriptional Fingerprint Suggesting Disruption of Rb?MyoD Pathways in Muscle Regeneration. BrainBrain. 129(4):996-1013.

Gupta A, Hajiaghayi MT, R\äcke H.  2006.  Oblivious network design. Proceedings of the seventeenth annual ACM-SIAM symposium on Discrete algorithm. :970-979.

Carver JC, Hochstein LM, Kendall RP, Nakamura T, Zelkowitz MV, Basili VR, Post DE.  2006.  Observations about software development for high end computing. CTWatch Quarterly. 2(4A):33-38.

Rambow O, Dorr BJ, Farwell D, Green R, Habash N, Helmreich S, Hovy E, Levin L, Miller KJ, Mitamura T et al..  2006.  Parallel syntactic annotation of multiple languages. Proceedings of the Fifth International Conference on Language Resources and Evaluation (LREC2006). Genoa, Italy. 

Hadley D, Murphy T, Valladares O, Hannenhalli S, Ungar L, Kim J, Bu?an M.  2006.  Patterns of sequence conservation in presynaptic neural genes. Genome Biology. 7(11):R105-R105.

Hale J, Shafran I, Yung L, Dorr BJ, Harper M, Krasnyanskaya A, Lease M, Liu Y, Roark B, Snover M et al..  2006.  PCFGs with syntactic and prosodic indicators of speech repairs. Proceedings of the 21st International Conference on Computational Linguistics and the 44th annual meeting of the Association for Computational Linguistics. :161-168.

Kim K, Chalidabhongse TH, Harwood D, Davis LS.  2006.  PDR: A Performance Evaluation Method for Foreground-Background Segmentation Algorithms. EURASIP Journal on Applied Signal Processing. 

Neamtiu I, Hicks MW, Stoyle G, Oriol M.  2006.  Practical dynamic software updating for C. SIGPLAN Not.. 41(6):72-83.

Hajiaghayi MT, Jain K.  2006.  The prize-collecting generalized Steiner tree problem via a new approach of primal-dual schema. Proceedings of the seventeenth annual ACM-SIAM symposium on Discrete algorithm. :631-640.

Lindenbaum M, Samet H, Hjaltason GR.  2006.  A probabilistic analysis of trie-based sorting of large collections of line segments in spatial databases. SIAM Journal on Computing. 35(1):22-58.

Hussein M, Abd-Almageed W, Ran Y, Davis LS.  2006.  Real-Time Human Detection, Tracking, and Verification in Uncontrolled Camera Motion Environments. Computer Vision Systems, 2006 ICVS '06. IEEE International Conference on. :41-41.

Sen M, Hemaraj Y, Bhattacharyya SS, Shekhar R.  2006.  Reconfigurable image registration on FPGA platforms. Biomedical Circuits and Systems Conference, 2006. BioCAS 2006. IEEE. :154-157.

Hinsch H, Hannenhalli S.  2006.  Recurring genomic breaks in independent lineages support genomic fragility. BMC Evolutionary Biology. 6(1):90-90.

Brown B, Chetty M, Grimes A, Harmon E.  2006.  Reflecting on Health: A System for Students to Monitor Diet and Exercise. SIGCHI EA '06. :1807-1812.

Roark B, Liu Y, Harper M, Stewart R, Lease M, Snover M, Shafran I, Dorr BJ, Hale J, Krasnyanskaya A et al..  2006.  Reranking for Sentence Boundary Detection in Conversational Speech. 2006 IEEE International Conference on Acoustics, Speech and Signal Processing, 2006. ICASSP 2006 Proceedings. 1:I-I-I-I.

Lewinski MK, Yamashita M, Emerman M, Ciuffi A, Marshall H, Crawford G, Collins F, Shinn P, Leipzig J, Hannenhalli S et al..  2006.  Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection. PLoS PathogPLoS Pathog. 2(6):e60-e60.

Swamy N, Hicks MW, Morrisett G, Grossman D, Jim T.  2006.  Safe manual memory management in Cyclone. Science of Computer Programming. 62(2):122-144.

Su G-M, Han Z, M. Wu, Liu KJR.  2006.  A Scalable Multiuser Framework for Video Over OFDM Networks: Fairness and Efficiency. Circuits and Systems for Video Technology, IEEE Transactions on. 16(10):1217-1231.

Alam M, Hasan NA, Sadique A, Bhuiyan NA, Ahmed KU, Nusrin S, Nair BG, Siddique AK, Sack BR, Sack DA et al..  2006.  Seasonal Cholera Caused by Vibrio Cholerae Serogroups O1 and O139 in the Coastal Aquatic Environment of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 72(6):4096-4104.

Berry C, Hannenhalli S, Leipzig J, Bushman FD.  2006.  Selection of Target Sites for Mobile DNA Integration in the Human Genome. PLoS Comput BiolPLoS Comput Biol. 2(11):e157-e157.

Han B, Davis LS.  2006.  Semi-Parametric Model-Based Clustering for DNA Microarray Data. Pattern Recognition, 2006. ICPR 2006. 18th International Conference on. 3:324-327.

Lazar J, Jones A, Hackley M, Shneiderman B.  2006.  Severity and impact of computer user frustration: A comparison of student and workplace users. Interacting with Computers. 18(2):187-207.

Plaisant C, Clamage A, Hutchinson H B, Bederson BB, Druin A.  2006.  Shared family calendars: Promoting symmetry and accessibility. ACM Trans. Comput.-Hum. Interact.. 13(3):313-346.

Roark B, Harper M, Charniak E, Dorr BJ, Johnson M, Kahn J, Liu Y, Ostendorf M, Hale J, Krasnyanskaya A et al..  2006.  SParseval: Evaluation metrics for parsing speech. Proc. LREC. 

Andrews M, Hofmann M, Shepherd B, Srinivasan A, Winkler P, Zane F.  2006.  System and method for locating a closest server in response to a client .... 09/726,192(7020698)

Lee B, Plaisant C, Parr C S, Fekete J-D, Henry N.  2006.  Task taxonomy for graph visualization. Proceedings of the 2006 AVI workshop on BEyond time and errors: novel evaluation methods for information visualization. :1-5.

Shet VD, Harwood D, Davis LS.  2006.  Top-down, bottom-up multivalued default reasoning for identity maintenance. Proceedings of the 4th ACM international workshop on Video surveillance and sensor networks. :79-86.

De Floriani L, Hui A, Papaleo L.  2006.  Topology-based reasoning on non-manifold shapes. Proceedings of the 1st International Symposium on Shapes and Semantics, Matsushima, Japan. 

Haas SW, Denn S, Locke D, Shneiderman B, Brown L.  2006.  Toward an enriched (and revitalized) sense of help: Summary of an ASIS&T 2005 panel session. Bulletin of the American Society for Information Science and Technology. 32(5):23-26.

Alam M, Sultana M, Nair BG, Sack BR, Sack DA, Siddique AK, Ali A, Huq A, Colwell RR.  2006.  Toxigenic Vibrio Cholerae in the Aquatic Environment of Mathbaria, Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 72(4):2849-2855.

Abd-Almageed W, Hussein M, Davis LS.  2006.  Tracking Articulating Objects from Ground Vehicles using Mixtures of Mixtures. Intelligent Robots and Systems, 2006 IEEE/RSJ International Conference on. :1230-1236.

Hannenhalli S, Putt ME, Gilmore JM, Wang J, Parmacek MS, Epstein JA, Morrisey EE, Margulies KB, Cappola TP.  2006.  Transcriptional Genomics Associates FOX Transcription Factors With Human Heart Failure. Circulation. 114(12):1269-1276.

Hicks B, King D, McDaniel P, Hicks MW.  2006.  Trusted declassification:: high-level policy for a security-typed language. Proceedings of the 2006 workshop on Programming languages and analysis for security. :65-74.

Lee B, Parr C, Plaisant C, Bederson BB.  2006.  Visualizing Graphs as Trees: Plant a Seed and Watch it Grow. Graph DrawingGraph Drawing. 3843:516-518.

Xu Q, desJardins M, Wagstaff K.  2005.  Active Constrained Clustering by Examining Spectral Eigenvectors. Discovery ScienceDiscovery Science. 3735:294-307.

Canetti R, Halevi S, Katz J.  2005.  Adaptively-secure, non-interactive public-key encryption. Theory of Cryptography. :150-168.

Demaine ED, Hajiaghayi MT, Kawarabayashi K.  2005.  Algorithmic graph minor theory: Decomposition, approximation, and coloring. Foundations of Computer Science, 2005. FOCS 2005. 46th Annual IEEE Symposium on. :637-646.

Varshavsky A, Chen MY, de Lara E, Froehlich J, Haehnel D, Hightower J, LaMarca A, Potter F, Sohn T, Tang K et al..  2005.  Are GSM phones THE solution for localization? Mobile Computing Systems and Applications, 2006. WMCSA'06. Proceedings. 7th IEEE Workshop on. :34-42.

Keogh E, Hochheiser H, Shneiderman B.  2005.  An Augmented Visual Query Mechanism for Finding Patterns in Time Series Data (2002). Institute for Systems Research Technical Reports. 

Williams CC, Hollingsworth J.  2005.  Automatic Mining of Source Code Repositories to Improve Bug Finding Techniques. IEEE Transactions on Software Engineering. 31(6):466-480.

Kim K, Harwood D, Davis LS.  2005.  Background updating for visual surveillance. Advances in Visual Computing. :337-346.

Han B, Yang C, Duraiswami R, Davis LS.  2005.  Bayesian filtering and integral image for visual tracking. Proceedings of the Worshop on Image Analysis for Multimedia Interactive Services (WIAMIS'05). 

Hwa R, Resnik P, Weinberg A, Cabezas C, Kolak O.  2005.  Bootstrapping parsers via syntactic projection across parallel texts. Nat. Lang. Eng.. 11(3):311-325.

Horvitz O, Katz J.  2005.  Bounds on the efficiency of black-box commitment schemes. Automata, Languages and Programming. :62-62.

Hwa R, Resnik P, Weinberg A.  2005.  Breaking the resource bottleneck for multilingual parsing. 

Seo J, Bakay M, Chen Y-W, Hilmer S, Shneiderman B, Hoffman EP.  2005.  Building a Coherent Data Pipeline in Microarray Data Analyses: Optimization of Signal/Noise Ratios Using an Interactive Visualization Tool and a Novel Noise Filtering Method (2003). Institute for Systems Research Technical Reports. 

He S, M. Wu.  2005.  Building efficient and effective multimedia fingerprints via joint coding and embedding. Proceedings of the 7th workshop on Multimedia and security. :127-136.

Hochstein L, Basili VR, Zelkowitz MV, Hollingsworth J, Carver J.  2005.  Combining self-reported and automatic data to improve programming effort measurement. Proceedings of the 10th European software engineering conference held jointly with 13th ACM SIGSOFT international symposium on Foundations of software engineering. :356-365.

El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C et al..  2005.  Comparative Genomics of Trypanosomatid Parasitic Protozoa. Science. 309(5733):404-409.

Sen M, Corretjer I, Haim F, Saha S, Bhattacharyya SS, Schlessman J, Wolf W.  2005.  Computer vision on FPGAs: Design methodology and its application to gesture recognition. Computer Vision and Pattern Recognition-Workshops, 2005. CVPR Workshops. IEEE Computer Society Conference on. :133-133.

Hochheiser H, Shneiderman B.  2005.  Coordinating Overviews and Detail Views of WWW Log Data (2000). Institute for Systems Research Technical Reports. 

Huq A, Sack BR, Nizam A, Longini IM, Nair BG, Ali A, Morris GJ, Khan HMN, Siddique KA, Yunus M et al..  2005.  Critical Factors Influencing the Occurrence of Vibrio Cholerae in the Environment of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 71(8):4645-4654.

Grossman D, Hicks MW, Jim T, Morrisett G.  2005.  Cyclone: A type-safe dialect of C. C/C++ Users Journal. 23(1):112-139.

De Floriani L, Hui A.  2005.  Data structures for simplicial complexes: an analysis and a comparison. Proceedings of the third Eurographics symposium on Geometry processing. 

Tanin E, Harwood A, Samet H.  2005.  A distributed quadtree index for peer-to-peer settings. PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON DATA ENGINEERING. 21:254-254.

Huang M, DeMenthon D, Doermann D, Golebiowski L.  2005.  Document Ranking by Layout Relevance. ICDAR. :362-366.

Rose J, Swamy N, Hicks MW.  2005.  Dynamic inference of polymorphic lock types. Science of Computer Programming. 58(3):366-383.

Hochheiser H, Shneiderman B.  2005.  Dynamic query tools for time series data sets: Timebox widgets for interactive exploration (2004). Institute for Systems Research Technical Reports. 

Hochheiser H, Baehrecke EH, Mount SM, Shneiderman B.  2005.  Dynamic Querying for Pattern Identification in Microarray and Genomic Data (2003). Institute for Systems Research Technical Reports. 

Hicks MW, Nettles S.  2005.  Dynamic software updating. ACM Trans. Program. Lang. Syst.. 27(6):1049-1096.

Hicks MW, Tse S, Hicks B, Zdancewic S.  2005.  Dynamic updating of information-flow policies. Proceedings of the International Workshop on Foundations of Computer Security (FCS). 

Tikir MM, Hollingsworth J.  2005.  Efficient online computation of statement coverage. Journal of Systems and Software. 78(2):146-165.

Hollingsworth J, Snavely A, Sbaraglia S, Ekanadham K.  2005.  EMPS: an environment for memory performance studies. Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International. 

Hannenhalli S, Wang L-S.  2005.  Enhanced position weight matrices using mixture models. Bioinformatics. 21(Suppl 1):i204-i212-i204-i212.

Haas SW, Brown L, Denn S, Locke D, Shneiderman B.  2005.  Envisioning help resources for the future information ecology: Toward an enriched sense of help. Proceedings of the American Society for Information Science and Technology. 42(1):n/a-n/a-n/a-n/a.

Hovemeyer D, Spacco J, Pugh W.  2005.  Evaluating and tuning a static analysis to find null pointer bugs. Proceedings of the 6th ACM SIGPLAN-SIGSOFT workshop on Program analysis for software tools and engineering. :13-19.

Lindvall M, Rus I, Shull F, Zelkowitz MV, Donzelli P, Memon AM, Basili VR, Costa P, Tvedt R, Hochstein L.  2005.  An evolutionary testbed for software technology evaluation. Innovations in Systems and Software Engineering. 1(1):3-11.

Deshpande A, Guestrin C, Hong W, Madden S.  2005.  Exploiting Correlated Attributes in Acquisitional Query Processing. 21st International Conference on Data Engineering, 2005. ICDE 2005. Proceedings. :143-154.

Marchionini G, Hert C, Liddy L, Shneiderman B.  2005.  Extending User Understanding of Federal Statistics in Tables (2000). Institute for Systems Research Technical Reports. 

Hale K, Keyser SJ, Hutchins WJ, Habash N, Dorr BJ, Traum D.  2005.  Finite-State Language resources and Language Processing. Machine Translation. 18:381-382.

Wang J, Hannenhalli S.  2005.  Generalizations of Markov model to characterize biological sequences. BMC Bioinformatics. 6(1):219-219.

Asgari S, Hochstein L, Basili VR, Zelkowitz MV, Hollingsworth J, Carver J, Shull F.  2005.  Generating testable hypotheses from tacit knowledge for high productivity computing. Proceedings of the second international workshop on Software engineering for high performance computing system applications. :17-21.

MacLeod A, Tweedie A, McLellan S, Taylor S, Hall N, Berriman M, El-Sayed NM, Hope M, Turner CMR, Tait A.  2005.  The genetic map and comparative analysis with the physical map of Trypanosoma brucei. Nucleic acids research. 33(21):6688-6688.

Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, Bartholomeu DC, Lennard NJ, Caler E, Hamlin NE, Haas B et al..  2005.  The genome of the African trypanosome Trypanosoma brucei. Science. 309(5733):416-416.

Loftus B, Anderson I, Davies R, Alsmark UCM, Samuelson J, Amedeo P, Roncaglia P, Berriman M, Hirt RP, Mann BJ et al..  2005.  The genome of the protist parasite Entamoeba histolytica. Nature. 433(7028):865-868.

El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science. 309(5733):409-415.

El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.

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Lazar J, Jones A, Hackley M, Shneiderman B.  2005.  Severity and Impact of Computer User Frustration: A Comparison of Student and Workplace Users (2002). Institute for Systems Research Technical Reports. 

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Spacco J, Strecker J, Hovemeyer D, Pugh W.  2005.  Software repository mining with Marmoset: an automated programming project snapshot and testing system. ACM SIGSOFT Software Engineering Notes. 30(4):1-5.

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Oriol M, Hicks MW.  2005.  Tagged Sets: A Secure and Transparent Coordination Medium. Coordination Models and LanguagesCoordination Models and Languages. 3454:193-205.

Marchionini G, Haas S, Plaisant C, Shneiderman B, Hert C.  2005.  Toward a Statistical Knowledge Network (2004). Institute for Systems Research Technical Reports. 

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Shet VD, Harwood D, Davis LS.  2005.  VidMAP: video monitoring of activity with Prolog. Advanced Video and Signal Based Surveillance, 2005. AVSS 2005. IEEE Conference on. :224-229.

Hochheiser H, Shneiderman B.  2005.  Visual Specification of Queries for Finding Patterns in Time-Series Data (2001). Institute for Systems Research Technical Reports. 

Hashmi N, Lee S, Cummings MP.  2004.  Abstracting workflows: unifying bioinformatics task conceptualization and specification through Semantic Web services. W3C Workshop on Semantic Web for Life Sciences. 

Hajiaghayi MT, Kleinberg R, Parkes DC.  2004.  Adaptive limited-supply online auctions. Proceedings of the 5th ACM Conference on Electronic Commerce. :71-80.

Canetti R, Halevi S, Katz J.  2004.  Adaptively-Secure, Non-Interactive Public-Key Encryption. Model reduction methods for vector autoregressive processes. :150-150.

Chung I-H, Hollingsworth J.  2004.  Automated cluster-based Web service performance tuning. 13th IEEE International Symposium on High performance Distributed Computing, 2004. Proceedings. :36-44.

Byrne W, Doermann D, Franz M, Gustman S, Hajic J, Oard D, Picheny M, Psutka J, Ramabhadran B.  2004.  Automatic recognition of spontaneous speech for access to multilingual oral history archives. IEEE Transactions on Speech and Audio Processing, Special Issue on Spontaneous Speech Processing. 12(4):420-435.

Kim K, Chalidabhongse TH, Harwood D, Davis LS.  2004.  Background modeling and subtraction by codebook construction. Image Processing, 2004. ICIP '04. 2004 International Conference on. 5:3061-3064Vol.5-3061-3064Vol.5.

Fomin EDDFV, Hajiaghayi MT, Thilikos DM.  2004.  Bidimensional Parameters and Local Treewidth. Latin 2004: Theoretical Informatics: 6th Latin American Symposium, Buenos Aires, Argentina, April 5-8, 2004: Proceedings. :109-109.

Williams CC, Hollingsworth J.  2004.  Bug driven bug finders. Proceedings of the International Workshop on Mining Software Repositories. :70-74.

Oard D, Soergel D, Doermann D, Huang X, Murray CG, Wang J, Ramabhadran B, Franz M, Gustman S, Mayfield J et al..  2004.  Building an information retrieval test collection for spontaneous conversational speech. Proceedings of the 27th annual international ACM SIGIR conference on Research and development in information retrieval. :41-48.

Hourcade JP, Bederson BB, Druin A.  2004.  Building KidPad: an application for children's collaborative storytelling. Software: Practice and Experience. 34(9):895-914.

Asgari S, Basili VR, Carver J, Hochstein L, Hollingsworth J, Zelkowitz MV.  2004.  Challenges in Measuring HPCS Learner Productivity in an Age of Ubiquitous Computing: The HPCS Program. In Proceedings of ICSE Workshop on High Productivity Computing. May 2004. 

Ishimori N, Walsh K, Zheng X, Lu F, Hannenhalli S, Nusskern D, Mural R, Paigen B.  2004.  CHARACTERIZATION OF Ath17, A QUANTITATIVE TRAIT LOCUS FOR ATHEROSCLEROSIS SUSCEPTIBILITY BETWEEN C57BL/6J AND 129S1/SvImJ; SINGLE-NUCLEOTIDE POLYMORPHISMS HAVE IMPORTANT IMPLICATIONS ON IDENTIFYING ATHEROSCLEROSIS MODIFIER GENES. Cardiovascular Pathology. 13(3, Supplement):5-6.

Canetti R, Halevi S, Katz J.  2004.  Chosen-ciphertext security from identity-based encryption. Advances in Cryptology-Eurocrypt 2004. :207-222.

Buck BR, Hollingsworth J.  2004.  Data Centric Cache Measurement on the Intel ltanium 2 Processor. Proceedings of the 2004 ACM/IEEE conference on Supercomputing. :58?-58?.

Kolda T, Brown D, Corones J, Critchlow T, Eliassi-Rad T, Getoor L, Hendrickson B, Kumar V, Lambert D, Matarazzo C.  2004.  Data sciences technology for homeland security information management and knowledge discovery. Report of the DHS Workshop Data Sciences, Jointly Released by Sandia National Laboratories and Lawrence Livermore National Laboratory, Alexandria, Va. 

De Floriani L, Greenfieldboyce D, Hui A.  2004.  A data structure for non-manifold simplicial d-complexes. Proceedings of the 2004 Eurographics/ACM SIGGRAPH symposium on Geometry processing. :83-92.

Hsu CJ, Keceli F, Ko MY, Shahparnia S, Bhattacharyya SS.  2004.  DIF: An interchange format for dataflow-based design tools. Computer Systems: Architectures, Modeling, and Simulation. :3-32.

Su G-M, Han Z, Kwasinski A, M. Wu, Liu KJR, Farvardin N.  2004.  Distortion management of real-time MPEG-4 video over downlink multicode CDMA networks. Communications, 2004 IEEE International Conference on. 5:3071-3075Vol.5-3071-3075Vol.5.

Hansel D, Cleaveland R, Smolka SA.  2004.  Distributed prototyping from validated specifications. Journal of Systems and Software. 70(3):275-298.

Dorr BJ, Ayan NF, Habash N.  2004.  Divergence Unraveling for Word Alignment.... Natural Language Engineering. 

Welch D MB, Cummings MP, Hillis DM, Meselson M.  2004.  Divergent Gene Copies in the Asexual Class Bdelloidea (Rotifera) Separated Before the Bdelloid Radiation or Within Bdelloid Families. Proceedings of the National Academy of Sciences of the United States of AmericaPNAS. 101(6):1622-1625.

Su G-M, Han Z, M. Wu, Liu KJR.  2004.  Dynamic distortion control for 3-D embedded wavelet video over multiuser OFDM networks. Global Telecommunications Conference, 2004. GLOBECOM '04. IEEE. 2:650-654Vol.2-650-654Vol.2.

Hochheiser H, Shneiderman B.  2004.  Dynamic Query Tools for Time Series Data Sets: Timebox Widgets for Interactive Exploration. Information VisualizationInformation Visualization. 3(1):1-18.

Hao X, Varshney A.  2004.  Efficient solution of poisson-boltzmann equation for electrostatics of large molecules. High-Performance Computing Symposium (April 2004). :71-76.

Asgari S, Basili VR, Costa P, Donzelli P, Hochstein L, Lindvall M, Rus I, Shull F, Tvedt R, Zelkowitz MV.  2004.  Empirical-based estimation of the effect on software dependability of a technique for architecture conformance verification. Proceedings of the ICSE 2004 Workshop on Architecting Dependable Systems, Edinburgh, UK. 

Hicks MW, Morrisett G, Grossman D, Jim T.  2004.  Experience with safe manual memory-management in cyclone. Proceedings of the 4th international symposium on Memory management. :73-84.

Hovemeyer D, Pugh W.  2004.  Finding bugs is easy. ACM SIGPLAN NoticesSIGPLAN Not.. 39(12):92-92.

Hovemeyer D, Pugh W.  2004.  Finding concurrency bugs in java. Proceedings of the PODC Workshop on Concurrency and Synchronization in Java Programs, St. John's, Newfoundland, Canada. 

Sirin E, Parsia B, Wu D, Hendler J, Nau DS.  2004.  HTN planning for Web Service composition using SHOP2. Web Semantics: Science, Services and Agents on the World Wide Web. 1(4):377-396.

Dorr BJ, He D, Luo J, Oard D, Schwartz R, Wang J, Zajic D.  2004.  iCLEF 2003 at Maryland: Translation Selection and Document Selection. Comparative Evaluation of Multilingual Information Access SystemsComparative Evaluation of Multilingual Information Access Systems. 3237:231-265.

Dorr BJ, He D, Luo J, Oard D, Schwartz R, Wang J, Zajic D.  2004.  iCLEF 2003 at Maryland: Translation selection and document selection. Comparative Evaluation of Multilingual Information Access Systems. :231-265.

He D, Wang J, Luo J, Oard D.  2004.  iCLEF 2004 at Maryland: Summarization design for interactive cross-language question answering. Proceeding of Cross Language Evaluation Forum (CLEF2004). 

Mastronardi N, Lemmerling P, Kalsi A, O?Leary DP, Huffel VS.  2004.  Implementation of the regularized structured total least squares algorithms for blind image deblurring. Linear Algebra and its Applications. 391:203-221.

Han B, Comaniciu D, Zhu Y, Davis LS.  2004.  Incremental density approximation and kernel-based bayesian filtering for object tracking. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 1

Tanin E, Harwood A, Samet H.  2004.  Indexing distributed complex data for complex queries. Proceedings of the 2004 annual national conference on Digital government research. :63:1?63:10-63:1?63:10.

Kuter U, Sirin E, Nau DS, Parsia B, Hendler J.  2004.  Information Gathering During Planning for Web Service Composition. The Semantic Web ? ISWC 2004. 3298:335-349.

Bringaud F, Biteau N, Zuiderwijk E, Berriman M, El-Sayed NM, Ghedin E, Melville SE, Hall N, Baltz T.  2004.  The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei. Molecular biology and evolution. 21(3):520-520.

Williams CC, Hollingsworth J.  2004.  Interactive binary instrumentation. Second International Workshop on Remote Analysis and Measurement of Software Systems (RAMSS). 

Seo J, Bakay M, Chen Y-W, Hilmer S, Shneiderman B, Hoffman EP.  2004.  Interactively Optimizing Signal-to-Noise Ratios in Expression Profiling: Project-Specific Algorithm Selection and Detection P-Value Weighting in Affymetrix Microarrays. BioinformaticsBioinformatics. 20(16):2534-2544.

Reeder F, Dorr BJ, Farwell D, Habash N, Helmreich S, Hovy E, Levin L, Mitamura T, Miller K, Rambow O et al..  2004.  Interlingual Annotation for MT Development. Machine Translation: From Real Users to ResearchMachine Translation: From Real Users to Research. 3265:236-245.

Farwell D, Helmreich S, Dorr BJ, Habash N, Reeder F, Miller K, Levin L, Mitamura T, Hovy E, Rambow O et al..  2004.  Interlingual annotation of multilingual text corpora. Proceedings of the North American Chapter of the Association for Computational Linguistics Workshop on Frontiers in Corpus Annotation. :55-62.

Deshpande A, Hellerstein JM.  2004.  Lifting the burden of history from adaptive query processing. Proceedings of the Thirtieth international conference on Very large data bases - Volume 30. :948-959.

Lee C H, Hao X, Varshney A.  2004.  Light Collages: Lighting Design for Effective Visualization. Proceedings of the conference on Visualization '04. :281-288.

B?doiu M, Demaine ED, Hajiaghayi MT, Indyk P.  2004.  Low-dimensional embedding with extra information. Proceedings of the twentieth annual symposium on Computational geometry. :320-329.

Deng Y, Hung E, V.S. Subrahmanian.  2004.  Maintaining RDF views. 

Deshpande A, Guestrin C, Madden SR, Hellerstein JM, Hong W.  2004.  Model-driven data acquisition in sensor networks. Proceedings of the Thirtieth international conference on Very large data bases - Volume 30. :588-599.

Ayan N, Dorr BJ, Habash N.  2004.  Multi-align: Combining Linguistic and Statistical Techniques to Improve Alignments for Adaptable MT. Machine Translation: From Real Users to ResearchMachine Translation: From Real Users to Research. 3265:17-26.

Herrmann JW, Cooper J, Gupta SK, Hayes CC, Ishii K, Kazmer D, Sandborn PA, Wood WH.  2004.  New directions in design for manufacturing. :1-9.

Basili VR, Boehm B, Davis A, Humphrey WS, Leveson N, Mead NR, Musa JD, Parnas DL, Pfleeger SL, Weyuker E.  2004.  New year?s resolutions for software quality. IEEE Software. 21(1):12-13.

Bafna V, Gusfield D, Hannenhalli S, Yooseph S.  2004.  A Note on Efficient Computation of Haplotypes via Perfect Phylogeny. Journal of Computational Biology. 11(5):858-866.

Han B, Davis LS.  2004.  Object tracking by adaptive feature extraction. Image Processing, 2004. ICIP '04. 2004 International Conference on. 3:1501-1504Vol.3-1501-1504Vol.3.

Gil AI, Louis VR, Rivera ING, Lipp E, Huq A, Lanata CF, Taylor DN, Russek?Cohen E, Choopun N, Sack BR et al..  2004.  Occurrence and distribution of Vibrio cholerae in the coastal environment of Peru. Environmental Microbiology. 6(7):699-706.

Islam MS, Tasmin R, s l a m Khan SI, Bakht HBM, a y a t Mahmood ZH, i a u r Rahman MZ, m i n Bhuiyan NA, Nishibuchi M, a l a k r i s h Nair GB, r a d l e y Sack RB et al..  2004.  Pandemic strains of O3:K6 Vibrio parahaemolyticus in the aquatic environment of Bangladesh. Canadian Journal of Microbiology. 50(10):827-834.

He S, Wu M.  2004.  Performance study of ECC-based collusion-resistant multimedia fingerprinting. Proceedings of the 38th CISS. :827-832.

Espeland EM, Lipp EK, Huq A, Colwell RR.  2004.  Polylysogeny and prophage induction by secondary infection in Vibrio cholerae. Environmental Microbiology. 6(7):760-763.

Hourcade JP, Bederson BB, Druin A.  2004.  Preschool children's use of mouse buttons. CHI'04 extended abstracts on Human factors in computing systems. :1411-1412.

Marchionini G, Haas S, Shneiderman B, Plaisant C, Hert CA.  2004.  Project highlight: toward the statistical knowledge network. Proceedings of the 2004 annual national conference on Digital government research. :125:1?125:2-125:1?125:2.

Hao X, Varshney A.  2004.  Real-time rendering of translucent meshes. ACM Trans. Graph.. 23(2):120-142.

Horvitz O, Katz J, Koo CY, Morselli R.  2004.  Reducing complexity assumptions for statistically-hiding commitment. In EUROCRYPT. 

Roberts M, Hayes W, Hunt BR, Mount SM, Yorke JA.  2004.  Reducing storage requirements for biological sequence comparison. BioinformaticsBioinformatics. 20(18):3363-3369.

Ryu KD, Hollingsworth J.  2004.  Resource policing to support fine-grain cycle stealing in networks of workstations. IEEE Transactions on Parallel and Distributed Systems. 15(10):878-892.

Hovemeyer D, Hollingsworth J, Bhattacharjee B.  2004.  Running on the bare metal with GeekOS. Proceedings of the 35th SIGCSE technical symposium on Computer science education. :315-319.

LoVerde PT, Hirai H, Merrick JM, Lee NH, El-Sayed NM.  2004.  Schistosoma mansoni genome project: an update. Parasitology International. 53(2):183-192.

Dorr BJ, Green R, Levin L, Rambow O, Farwell D, Habash N, Helmreich S, Hovy E, Miller KJ, Mitamura T et al..  2004.  Semantic annotation and lexico-syntactic paraphrase. Proceedings of the 4th International Conference on Language Resources and Evaluation (LREC) Workshop on Building Lexical Resources from Semantically Annotated Corpora. :47-52.

Mitamura T, Miller K, Dorr BJ, Farwell D, Habash N, Helmreich S, Hovy E, Levin L, Rambow O, Reeder F et al..  2004.  Semantic Annotation for Interlingual Representation of Multilingual Texts. Workshop Programme. :19-19.

Han B, Comaniciu D, Davis LS.  2004.  Sequential kernel density approximation through mode propagation: applications to background modeling. Proc. ACCV. 2004

Tanin E, Harwood A, Samet H, Nutanong S, Truong M T.  2004.  A serverless 3D world. Proceedings of the 12th annual ACM international workshop on Geographic information systems. :157-165.

Varadan R, Assfalg M, Haririnia A, Raasi S, Pickart C, Fushman D.  2004.  Solution Conformation of Lys63-linked Di-ubiquitin Chain Provides Clues to Functional Diversity of Polyubiquitin Signaling. Journal of Biological ChemistryJ. Biol. Chem.. 279(8):7055-7063.

Carver J, Asgari S, Basili VR, Hochstein L, Hollingsworth J, Shull F, Zelkowitz MV.  2004.  Studying code development for high performance computing: the HPCS program. First International Workshop On Software Engineering for High Performance Computing System Applications. :32-32.

Dorr BJ, Habash NY, Monz C.  2004.  Symbolic MT With Statistical NLP Components. 

Hung E, Deng Y, V.S. Subrahmanian.  2004.  TOSS: an extension of TAX with ontologies and similarity queries. Proceedings of the 2004 ACM SIGMOD international conference on Management of data. :719-730.

Pratikakis P, Spacco J, Hicks MW.  2004.  Transparent proxies for java futures. Proceedings of the 19th annual ACM SIGPLAN conference on Object-oriented programming, systems, languages, and applications. :206-223.

Ryu KD, Hollingsworth J.  2004.  Unobtrusiveness and efficiency in idle cycle stealing for PC grids. Parallel and Distributed Processing Symposium, 2004. Proceedings. 18th International. 

De Floriani L, Hui A.  2004.  Update operations on 3D simplicial decompositions of non-manifold objects. Proceedings of the ninth ACM symposium on Solid modeling and applications. :169-180.

Dorr BJ, Habash NY, Monz C, Schwartz R.  2004.  Use of Minimal Lexical Conceptual Structures for Single-Document Summarization. 

Tikir MM, Hollingsworth J.  2004.  Using Hardware Counters to Automatically Improve Memory Performance. Proceedings of the 2004 ACM/IEEE conference on Supercomputing. :46?-46?.

Binsztein N, Costagliola MC, Pichel M, Jurquiza V, Ramírez FC, Akselman R, Vacchino M, Huq A, Colwell RR.  2004.  Viable but Nonculturable Vibrio Cholerae O1 in the Aquatic Environment of Argentina. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 70(12):7481-7486.

Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, Walenz B, Shatkay H, Dew I, Miller JR et al..  2004.  Whole-genome shotgun assembly and comparison of human genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 101(7):1916-1916.

Hotho A, Sure Y, Getoor L.  2004.  A workshop report: mining for and from the Semantic Web at KDD 2004. SIGKDD Explor. Newsl.. 6(2):142-143.

Gupta AK, Fadel GM, Lewicki DG, Shabana AA, Royston TJ, Gupta SK, Hayes C, Herrmann JW, Dym CL, Schmidt LC.  2003.  19th Biennial Conference on Mechanical Vibration and Noise. 

Sack BR, Siddique KA, Longini IM, Nizam A, Yunus M, Islam SM, Morris J, Ali A, Huq A, Nair BG et al..  2003.  A 4-Year Study of the Epidemiology of Vibrio Cholerae in Four Rural Areas of Bangladesh. Journal of Infectious DiseasesJ Infect Dis.. 187(1):96-101.

Hourcade JP, Bederson BB, Druin A, Guimbretiere F.  2003.  Accuracy, Target Reentry and Fitts? Law Performance of Preschool Children Using Mice. University of Maryland Technical Report, HCIL-2003. 16

Dhaliwal S, Gupta SK, Huang J, Priyadarshini A.  2003.  Algorithms for computing global accessibility cones. Journal of Computing and Information Science in Engineering. 3:200-200.

Feige U, Halldórsson MM, Kortsarz G, Srinivasan A.  2003.  Approximating the domatic number. SIAM Journal on Computing. 32(1):172-195.

Wu D, Parsia B, Sirin E, Hendler J, Nau DS.  2003.  Automating DAML-S Web Services Composition Using SHOP2. The Semantic Web - ISWC 2003. 2870:195-210.

Marchionini AS, Nation D, Karasik S, Cronnell T, Shneiderman B, Spotfire VDMU, Bederson BB, Data TS, Hochheiser H, Shneiderman B et al..  2003.  Bringing Treasures to the Surface: Previews and Overviews in a Prototype for the Library of Congress National Digital Library. The craft of information visualization: readings and reflections. :388-388.

Habash N, Dorr BJ.  2003.  A categorial variation database for English. Proceedings of the 2003 Conference of the North American Chapter of the Association for Computational Linguistics on Human Language Technology - Volume 1. :17-23.

Habash N, Dorr BJ.  2003.  CATVAR: A database of categorial variations for English. Proceedings of the MT Summit. :471-474.

Talledo M, Rivera ING, Lipp EK, Neale A, Karaolis D, Huq A, Colwell RR.  2003.  Characterization of a Vibrio cholerae phage isolated from the coastal water of Peru. Environmental Microbiology. 5(5):350-354.

Druin A, Revelle G, Bederson BB, Hourcade JP, Farber A, Lee J, Campbell D.  2003.  A collaborative digital library for children. Journal of Computer Assisted Learning. 19(2):239-248.

Cummings MP, Handley SA, Myers DS, Reed DL, Rokas A, Winka K.  2003.  Comparing bootstrap and posterior probability values in the four-taxon case. Syst Biol. 52(4):477-487.

He D, Wang J, Oard D, Nossal M.  2003.  Comparing user-assisted and automatic query translation. Advances in cross-language information retrieval. :400-415.

Memon AM, Banerjee I, Hashmi N, Nagarajan A.  2003.  DART: a framework for regression testing "nightly/daily builds" of GUI applications. Software Maintenance, 2003. ICSM 2003. Proceedings. International Conference on. :410-419.

Hoel EG, Samet H.  2003.  Data-parallel polygonization. Parallel Computing. 29(10):1381-1401.

Druin A, Bederson BB, Hourcade JP, Sherman L, Revelle G, Platner M, Weng S.  2003.  Designing a digital library for young children: An intergenerational partnership. The craft of information visualization: readings and reflections. 178

Oard D, Doermann D, Dorr BJ, He D, Resnik P, Weinberg A, Byrne W, Khudanpur S, Yarowsky D, Leuski A et al..  2003.  Desparately seeking cebuano. Third Conference on Human Language Technologies. 

Lipp EK, Rivera ING, Gil AI, Espeland EM, Choopun N, Louis VR, Russek-Cohen E, Huq A, Colwell RR.  2003.  Direct Detection of Vibrio Cholerae and ctxA in Peruvian Coastal Water and Plankton by PCR. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 69(6):3676-3680.

Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB, Delcher AL, Pop M, Wang W, Fraser CM et al..  2003.  The dog genome: survey sequencing and comparative analysis. Science. 301(5641)

Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB, Delcher AL, Pop M, Wang W, Fraser CM et al..  2003.  The Dog Genome: Survey Sequencing and Comparative Analysis. ScienceScience. 301(5641):1898-1903.

Saltz J, Catalyurek U, Kurc T, Gray M, Hastings S, Langella S, Narayanan S, Martino R, Bryant S, Peszynska M et al..  2003.  Driving scientific applications by data in distributed environments. Computational Science?ICCS 2003. :713-713.

Hochheiser H, Baehrecke EH, Mount SM, Shneiderman B.  2003.  Dynamic querying for pattern identification in microarray and genomic data. 2003 International Conference on Multimedia and Expo, 2003. ICME '03. Proceedings. 3:III-453-6vol.3-III-453-6vol.3.

Bierman G, Hicks MW, Sewell P, Stoyle G, Wansbrough K.  2003.  Dynamic rebinding for marshalling and update, with destruct-time ? Proceedings of the eighth ACM SIGPLAN international conference on Functional programming. :99-110.

Bederson BB, Lee B, Sherman RM, Herrnson PS, Niemi RG.  2003.  Electronic voting system usability issues. Proceedings of the SIGCHI conference on Human factors in computing systems. :145-152.

Hua S, Qu G, Bhattacharyya SS.  2003.  Energy reduction techniques for multimedia applications with tolerance to deadline misses. Proceedings of the 40th annual Design Automation Conference. :131-136.

Hwa R, Resnik P, Weinberg A, Kolak O.  2003.  Evaluating Translational Correspondence using Annotation Projection. UMIACS-TR-2003-25

Hua S, Qu G, Bhattacharyya SS.  2003.  Exploring the probabilistic design space of multimedia systems. 14th IEEE International Workshop on Rapid Systems Prototyping, 2003. Proceedings. :233-240.

Hutchinson H, Bederson BB, Plaisant C, Druin A.  2003.  Family Calendar Survey. Technical Reports from UMIACS. 

Bierman G, Hicks MW, Sewell P, Stoyle G.  2003.  Formalizing dynamic software updating. Proceedings of the Second International Workshop on Unanticipated Software Evolution (USE). 

Canetti R, Halevi S, Katz J.  2003.  A forward-secure public-key encryption scheme. Advances in Cryptology?Eurocrypt 2003. :646-646.

Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H|[eacute]|, Fouts DE, Eisen JA, Gill SR et al..  2003.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature. 423(6935):81-86.

Figueiredo MAT, Hancock ER, Pelillo M, Zerubia J.  2003.  Guest editors' Introduction to the special section on energy minimization methods in computer vision and pattern recognition. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 25(11):1361-1363.

Ceaparu I, Druin A, Guimbretiere F, Manipulation D, Shneiderman B, Westerlurid B, Keogh E, Hochheiser H, Shrieidemian B, Shneidemiari B et al..  2003.  HCIL Technical Report Listing (1993-2002). The craft of information visualization: readings and reflections. 27(29):393-393.

Zotkin DN, Hwang J, Duraiswami R, Davis LS.  2003.  HRTF personalization using anthropometric measurements. Applications of Signal Processing to Audio and Acoustics, 2003 IEEE Workshop on.. :157-160.

Habash N, Dorr BJ, Traum D.  2003.  Hybrid Natural Language Generation from Lexical Conceptual Structures. Machine Translation. 18(2):81-128.

Gebremichael M, Hicks MW.  2003.  Implementing On-line Software Upgrades in Java. 

Hjaltason GR, Samet H.  2003.  Improved search heuristics for the sa-tree. Pattern Recognition Letters. 24(15):2785-2795.

Haas BJ, Delcher AL, Mount SM, Wortman JR, Jr R SK, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD et al..  2003.  Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. Nucleic Acids ResearchNucl. Acids Res.. 31(19):5654-5666.

Zhao P, Seo J, Wang Z, Wang Y, Shneiderman B, Hoffman EP.  2003.  In vivo filtering of in vitro expression data reveals MyoD targets. Comptes Rendus Biologies. 326(10?11):1049-1065.

Hjaltason GR, Samet H.  2003.  Index-driven similarity search in metric spaces (Survey Article). ACM Trans. Database Syst.. 28(4):517-580.

Bederson BB, Plaisant C, Mushlin R, Snyder A, Li J, Heller D, Shneiderman B, Hochheiser H, Fekete JD, Czenvinski M.  2003.  Innovating the Interaction. The craft of information visualization: readings and reflectionsThe craft of information visualization: readings and reflections. :295-295.

Halperin E, Kortsarz G, Krauthgamer R, Srinivasan A, Wang N.  2003.  Integrality ratio for group Steiner trees and directed steiner trees. Proceedings of the fourteenth annual ACM-SIAM symposium on Discrete algorithms. :275-284.

Seo J, Bakay M, Zhao P, Chen YW, Clarkson P, Shneiderman B, Hoffman EP.  2003.  Interactive color mosaic and dendrogram displays for signal/noise optimization in microarray data analysis. Multimedia and Expo, 2003. ICME'03. Proceedings. 2003 International Conference on. 3:III?461-III?461.

Hao X, Baby T, Varshney A.  2003.  Interactive subsurface scattering for translucent meshes. Proceedings of the 2003 symposium on Interactive 3D graphics. :75-82.

Druin A, Bederson BB, Weeks A, Farber A, Grosjean J, Guha ML, Hourcade JP, Lee J, Liao S, Reuter K et al..  2003.  The International Children's Digital Library. First Monday. 8(5-5)

Druin A, Bederson BB, Weeks A, Farber A, Grosjean J, Guha ML, Hourcade JP, Lee J, Liao S, Reuter K et al..  2003.  The International Children's Digital Library: Description and analysis of first use. First Monday. 8(5):315-315.

Hourcade JP, Bederson BB, Druin A, Rose A, Farber A, Takayama Y.  2003.  The International Children's Digital Library: viewing digital books online. Interacting with Computers. 15(2):151-167.

Plaisant C, Mushlin R, Snyder A, Li J, Heller D, Shneiderman B.  2003.  LifeLines: Using Visualization to Enhance Navigation and Analysis of Patient Records. The Craft of Information VisualizationThe Craft of Information Visualization. :308-312.

He D, Oard D, Wang J, Luo J, Demner-Fushman D, Darwish K, Resnik P, Khudanpur S, Nossal M, Subotin M et al..  2003.  Making miracles: Interactive translingual search for cebuano and hindi. ACM Transactions on Asian Language Information Processing (TALIP). 2(3):219-244.

Rivera ING, Lipp EK, Gil A, Choopun N, Huq A, Colwell RR.  2003.  Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environmental Microbiology. 5(7):599-606.

Hornbaek K, Bederson BB, Plaisant C.  2003.  Navigation patterns & usability of zoomable user interfaces: with and without an overview. interactions. 10(1):11-12.

Dunlavy DM, Conroy JM, Schlesinger JD, Goodman SA, Okurowski M E, O'Leary DP, van Halteren H.  2003.  Performance of a Three-Stage System for Multi-Document Summarization. DUC 03 Conference ProceedingsDUC 03 Conference Proceedings. 

Chalidabhongse TH, Kim K, Harwood D, Davis LS.  2003.  A perturbation method for evaluating background subtraction algorithms. Joint IEEE International Workshop on Visual Surveillance and Performance Evaluation of Tracking and Surveillance (VS-PETS). 

Louis VR, Russek-Cohen E, Choopun N, Rivera ING, Gangle B, Jiang SC, Rubin A, Patz JA, Huq A, Colwell RR.  2003.  Predictability of Vibrio Cholerae in Chesapeake Bay. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 69(5):2773-2785.

Hombsek K, Bederson BB, Plaisant C.  2003.  Preserving Context with Zoomable User Interfaces. The craft of information visualization: readings and reflectionsThe craft of information visualization: readings and reflections. :83-83.

Hjaltason GR, Samet H.  2003.  Properties of embedding methods for similarity searching in metric spaces. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 25(5):530-549.

Hung E, Getoor L, V.S. Subrahmanian.  2003.  PXML: a probabilistic semistructured data model and algebra. Data Engineering, 2003. Proceedings. 19th International Conference on. :467-478.

Coppersmith D, Gamarnik D, Hajiaghayi MT, Sorkin GB.  2003.  Random MAX SAT, random MAX CUT, and their phase transitions. Proceedings of the fourteenth annual ACM-SIAM symposium on Discrete algorithms. :364-373.

Dorr BJ, Ayan N F, Habash N, Madnani N, Hwa R.  2003.  Rapid porting of DUSTer to Hindi. ACM Transactions on Asian Language Information Processing (TALIP). 2(2):118-123.

Colwell RR, Huq A, Islam SM, Aziz KMA, Yunus M, Khan HN, Mahmud A, Sack BR, Nair GB, Chakraborty J et al..  2003.  Reduction of Cholera in Bangladeshi Villages by Simple Filtration. Proceedings of the National Academy of SciencesPNAS. 100(3):1051-1055.

Hennacy K, Swamy N, Perlis D.  2003.  RGL study in a hybrid real-time system. Proceedings of the IASTED NCI. 

Hicks MW, Morrisett G, Grossman D, Jim T.  2003.  Safe and flexible memory management in Cyclone. Technical Reports from UMIACS. 

De Floriani L, Hui A.  2003.  A scalable data structure for three-dimensional non-manifold objects. Proceedings of the 2003 Eurographics/ACM SIGGRAPH symposium on Geometry processing. :72-82.

Funkhouser T, Min P, Kazhdan M, Chen J, Halderman A, Dobkin D, Jacobs DW.  2003.  A search engine for 3D models. ACM Trans. Graph.. 22(1):83-105.

Hicks MW, Keromytis AD, Smith JM.  2003.  A secure PLAN. IEEE Transactions on Systems, Man, and Cybernetics, Part C: Applications and Reviews. 33(3):413-426.

El-Sayed NM, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al..  2003.  The sequence and analysis of Trypanosoma brucei chromosome II. Nucleic acids research. 31(16):4856-4856.

Davis LS, Horaud R.  2003.  Special Issue on Visual Analysis of Human Movement. The International Journal of Robotics Research. 22(6):357-357.

Hert CA, Liddy ED, Shneiderman B, Marchionini G.  2003.  Supporting statistical electronic table usage by citizens. Commun. ACM. 46(1):52-54.

Hutchinson H, Mackay W, Westerlund B, Bederson BB, Druin A, Plaisant C, Beaudouin-Lafon M, Conversy S, Evans H, Hansen H et al..  2003.  Technology probes: inspiring design for and with families. Proceedings of the SIGCHI conference on Human factors in computing systems. :17-24.

Krishnamurthy S, Chandrasekaran S, Cooper O, Deshpande A, Franklin MJ, Hellerstein JM, Hong W, Madden S, Reiss F, Shah MA.  2003.  TelegraphCQ: An architectural status report. IEEE Data Engineering Bulletin. 26(1):11-18.

Chandrasekaran S, Cooper O, Deshpande A, Franklin MJ, Hellerstein JM, Hong W, Krishnamurthy S, Madden SR, Reiss F, Shah MA.  2003.  TelegraphCQ: continuous dataflow processing. Proceedings of the 2003 ACM SIGMOD international conference on Management of data. :668-668.

Marchionini G, Haas S, Plaisant C, Shneiderman B, Hert C.  2003.  Toward a statistical knowledge network. Proceedings of the 2003 annual national conference on Digital government research. :1-6.

Hannenhalli S, Levy S.  2003.  Transcriptional regulation of protein complexes and biological pathways. Mammalian Genome. 14(9):611-619.

Samet H, Alborzi H, Brabec F, Esperança C, Hjaltason GR, Morgan F, Tanin E.  2003.  Use of the SAND spatial browser for digital government applications. Commun. ACM. 46(1):61-64.

Hicks MW, Nagarajan A, van Renesse R.  2003.  User-specified adaptive scheduling in a streaming media network. 2003 IEEE Conference on Open Architectures and Network Programming. :87-96.

Raman V, Deshpande A, Hellerstein JM.  2003.  Using state modules for adaptive query processing. 19th International Conference on Data Engineering, 2003. Proceedings. :353-364.

Jimmy Lin, Quan D, Sinha V, Bakshi K, Huynh D, Katz B, Karger DR.  2003.  What makes a good answer? The role of context in question answering Human-Computer Interaction, Interact '03. :25-25.

Housley R, Arbaugh WA.  2003.  WLAN problems and solutions. Communications of the ACM. 46(5):31-34.

Berman P, Hannenhalli S, Karpinski M.  2002.  1.375-Approximation Algorithm for Sorting by Reversals. Algorithms ? ESA 2002Algorithms ? ESA 2002. 2461:401-408.

Blake B, Haigh K, Hexmoor H, Falcone R, Soh L-K, Baral C, McIlraith S, Gmytrasiewicz P, Parsons S, Malaka R et al..  2002.  AAAI 2002 Workshops. AI Magazine. 23(4):113-113.

Tapus C, Chung I-H, Hollingsworth J.  2002.  Active Harmony: Towards Automated Performance Tuning. Supercomputing, ACM/IEEE 2002 Conference. :44-44.

Agarwal PK, Guibas LJ, Edelsbrunner H, Erickson J, Isard M, Har-Peled S, Hershberger J, Jensen C, Kavraki L, Koehl P et al..  2002.  Algorithmic issues in modeling motion. ACM Comput. Surv.. 34(4):550-572.

Diehl S, Diehl F, El-Sayed NM, Clayton C, Hoheisel JD.  2002.  Analysis of stage-specific gene expression in the bloodstream and the procyclic form of Trypanosoma brucei using a genomic DNA-microarray. Molecular and Biochemical Parasitology. 123(2):115-123.

Keogh E, Hochheiser H, Shneiderman B.  2002.  An Augmented Visual Query Mechanism for Finding Patterns in Time Series Data. Flexible Query Answering SystemsFlexible Query Answering Systems. 2522:240-250.

Oard D, Demner-Fushman D, Hajic J, Ramabhadran B, Gustman S, Byrne WJ, Soergel D, Dorr BJ, Resnik P, Picheny M.  2002.  Automatic transcription of Czech language oral history in the MALACH project: resources and initial experiments. Proceedings of the The 5th International Conference on Text, Speech and Dialogue. :57-64.

Hwa R, Resnik P, Weinberg A.  2002.  Breaking the resource bottleneck for multilingual applications. 

Hutchinson H, Plaisant C, Druin A.  2002.  Case study: a message board as a technology probe for family communication and coordination. Proceedings of the 2002 Conference on Human Factors in Computing Systems. 

Ivanova EP, Matte GR, Matte MH, Coenye T, Huq A, Colwell RR.  2002.  Characterization of Pseudoalteromonas citrea and P. nigrifaciens Isolated from Different Ecological Habitats Based on REP-PCR Genomic Fingerprints. Systematic and Applied Microbiology. 25(2):275-283.

Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P.  2002.  Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77:1-19.

Read TD, Salzberg SL, Pop M, Shumway M, Umayam L, Jiang L, Holtzapple E, Busch JD, Smith KL, Schupp JM et al..  2002.  Comparative Genome Sequencing for Discovery of Novel Polymorphisms in Bacillus Anthracis. Science. 296(5575):2028-2033.

Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VAP, Fouts DE, Gill SR, Pop M, Holmes M et al..  2002.  Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environmental microbiology. 4(12):799-808.

Jim T, Morrisett G, Grossman D, Hicks MW, Cheney J, Wang Y.  2002.  Cyclone: A safe dialect of C. USENIX Annual Technical Conference. :275-288.

Deshpande A, Hellerstein JM.  2002.  Decoupled query optimization for federated database systems. 18th International Conference on Data Engineering, 2002. Proceedings. :716-727.

Fischer-Le Saux M, Hervio-Heath D, Loaec S, Colwell RR, Pommepuy M.  2002.  Detection of Cytotoxin-Hemolysin mRNA in Nonculturable Populations of Environmental and Clinical Vibrio Vulnificus Strains in Artificial Seawater. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 68(11):5641-5646.

Dorr BJ, Pearl L, Hwa R, Habash N.  2002.  DUSTer: A Method for Unraveling Cross-Language Divergences for Statistical Word-Level Alignment. Machine Translation: From Research to Real UsersMachine Translation: From Research to Real Users. 2499:31-43.

Hochheiser H, Shneiderman B.  2002.  A dynamic query interface for finding patterns in time series data. CHI '02 extended abstracts on Human factors in computing systems. :522-523.

Lipp EK, Huq A, Colwell RR.  2002.  Effects of Global Climate on Infectious Disease: The Cholera Model. Clinical Microbiology ReviewsClin. Microbiol. Rev.. 15(4):757-770.

Tikir MM, Hollingsworth J.  2002.  Efficient instrumentation for code coverage testing. ACM SIGSOFT Software Engineering Notes. 27:86-96.

Hwa R, Resnik P, Weinberg A, Kolak O.  2002.  Evaluating translational correspondence using annotation projection. :392-399.

Hwa R, Resnik P, Weinberg A, Kolak O.  2002.  Evaluating translational correspondence using annotation projection. Proceedings of the 40th Annual Meeting on Association for Computational Linguistics. :392-399.

Seong-Kyu S, Shannon S, Hicks MW, Nettles S.  2002.  Evolution in Action: Using Active Networking to Evolve Network Support for Mobility. Active NetworksActive Networks. 2546:146-161.

Schneider K, von Hunnius J-P, Basili VR.  2002.  Experience in implementing a learning software organization. Software, IEEE. 19(3):46-49.

Hicks MW, Moore JT, Wetherall D, Nettles S.  2002.  Experiences with capsule-based active networking. DARPA Active NEtworks Conference and Exposition, 2002. Proceedings. :16-24.

Demaine E, Hajiaghayi MT, Thilikos D.  2002.  Exponential speedup of fixed-parameter algorithms on K 3, 3-minor-free or K 5-minor-free graphs. Algorithms and Computation. :277-287.

Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):512-519.

Zo YG, Rivera ING, Russek-Cohen E, Islam MS, Siddique AK, Yunus M, Sack RB, Huq A, Colwell RR.  2002.  Genomic profiles of clinical and environmental isolates of Vibrio cholerae O1 in cholera-endemic areas of Bangladesh. Proceedings of the National Academy of Sciences. 99(19):12409-12409.

Habash N, Dorr BJ.  2002.  Handling Translation Divergences: Combining Statistical and Symbolic Techniques in Generation-Heavy Machine Translation. Machine Translation: From Research to Real UsersMachine Translation: From Research to Real Users. 2499:84-93.

Bringaud F, García-Pérez J L, Heras SR, Ghedin E, El-Sayed NM, Andersson B, Baltz T, Lopez MC.  2002.  Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi. Molecular and Biochemical Parasitology. 124(1-2):73-78.

Levy S, Hannenhalli S.  2002.  Identification of transcription factor binding sites in the human genome sequence. Mammalian Genome. 13(9):510-514.

Halperin E, Srinivasan A.  2002.  Improved Approximation Algorithms for the Partial Vertex Cover Problem. Approximation Algorithms for Combinatorial OptimizationApproximation Algorithms for Combinatorial Optimization. 2462:161-174.

Dorr BJ, Pearl L, Hwa R, Habash N.  2002.  Improved Word-Level Alignment: Injecting Knowledge about MT Divergences. 

Ceaparu I, Demner D, Hung E, Zhao H, Shneiderman B.  2002.  In Web we trust: establishing strategic trust among online customers. E-Service: new directions in theory and practice. :90-107.

Feamster N, Balazinska M, Harfst G, Balakrishnan H, Karger D.  2002.  Infranet: Circumventing web censorship and surveillance. Proceedings of the 11th USENIX Security Symposium. :247-262.

Scholtz J, Johnson J, Shneiderman B, Hope-Tindall P, Gosling M, Phillips J, Wexelblat A.  2002.  Interacting with identification technology: can it make us more secure? CHI '02 extended abstracts on Human factors in computing systems. :564-565.

Dorr BJ, Habash N.  2002.  Interlingua approximation: A generation-heavy approach. Proceedings of AMTA-2002. 

Hornbaek K, Bederson BB, Plaisant C.  2002.  Navigation patterns and usability of zoomable user interfaces with and without an overview. ACM Transactions on Computer-Human Interaction (TOCHI). 9(4):362-389.

Bringaud F, Biteau N, Melville SE, Hez S, El-Sayed NM, Leech V, Berriman M, Hall N, Donelson JE, Baltz T.  2002.  A new, expressed multigene family containing a hot spot for insertion of retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei. Eukaryotic cell. 1(1):137-137.

Elman H, Howle VE, Shadid J, Tuminaro R.  2002.  A Parallel Block Multi-level Preconditioner for the 3D Incompressible Navier--Stokes Equations. UMIACS-TR-2002-95

Hannenhalli S, Levy S.  2002.  Predicting Transcription Factor Synergism. Nucleic Acids ResearchNucl. Acids Res.. 30(19):4278-4284.

Hwang E, Prabhakaran B, V.S. Subrahmanian.  2002.  Presentation planning for distributed VoD systems. Knowledge and Data Engineering, IEEE Transactions on. 14(5):1059-1077.

Zhou S, Chellappa R.  2002.  Probabilistic Human Recognition from Video. Computer Vision ? ECCV 2002Computer Vision ? ECCV 2002. 2352:173-183.

[Anonymous].  2002.  RECOMB '02: Proceedings of the sixth annual international conference on Computational biology. 

Tikir MM, Hollingsworth J, Lueh G-Y.  2002.  Recompilation for debugging support in a JIT-compiler. Proceedings of the 2002 ACM SIGPLAN-SIGSOFT workshop on Program analysis for software tools and engineering. :10-17.

Grossman D, Morrisett G, Jim T, Hicks MW, Wang Y, Cheney J.  2002.  Region-based memory management in cyclone. SIGPLAN Not.. 37(5):282-293.

Hicks MW, Keromytis AD, Smith JM.  2002.  A secure PLAN (extended version). DARPA Active NEtworks Conference and Exposition, 2002. Proceedings. :224-237.

DeRose L, Ekanadham K, Hollingsworth J, Sbaraglia S.  2002.  SIGMA: A Simulator Infrastructure to Guide Memory Analysis. SC Conference. :1-1.

Choopun N, Louis V, Huq A, Colwell RR.  2002.  Simple Procedure for Rapid Identification of Vibrio Cholerae from the Aquatic Environment. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 68(2):995-998.

Hjaltason GR, Samet H.  2002.  Speeding up construction of PMR quadtree-based spatial indexes. The VLDB Journal. 11(2):109-137.

Dhaliwal S, Gupta SK, Huang J, Kumar M.  2002.  A Step Towards Automated Design of Multi-Piece Sacrificial Molds. 3:337-347.

Plaisant C, Druin A, Hutchinson H.  2002.  Technologies for families. CHI '02 extended abstracts on Human factors in computing systems. :938-939.

Schlesinger JD, Okurowski ME, Conroy JM, O'Leary DP, Taylor A, Hobbs J, Wilson HT.  2002.  Understanding Machine Performance in the Context of Human Performance for Multi-document Summarization. DUC 02 Conference ProceedingsDUC 02 Conference Proceedings. 

Deshpande A, Hellerstein J.  2002.  On using correlation-based synopses during query optimization. Computer Science Division (EECS), University of California Berkeley. 

Hoban S, desJardins M, Farrell N, Rathod P, Sachs J, Sansare S, Yesha Y, Keating J, Busschots B, Means J et al..  2002.  Virtual Telescopes in Education. Journal of Digital Information. 2(4)

Hochheiser H, Shneiderman B.  2002.  Visual queries for finding patterns in time series data. University of Maryland, Computer Science Dept. Tech Report, CS-TR-4365. 

Revelle G, Druin A, Platner M, Bederson BB, Hourcade JP, Sherman L.  2002.  A visual search tool for early elementary science students. Journal of Science Education and Technology. 11(1):49-57.

Lopez A, Nossal M, Hwa R, Resnik P.  2002.  Word-level Alignment for Multilingual Resource Acquisition. 

Eom H, Hollingsworth J.  2001.  Achieving Efficiency and Accuracy in Simulation for I/O-Intensive Applications. Journal of Parallel and Distributed Computing. 61(12):1732-1750.

Hannenhalli S, Russell RB.  2001.  Analysis and prediction of protein functional sub-types from protein sequence alignments. EP20000203764(EP1096411)

Haritaoglu I, Cozzi A, Koons D, Flickner M, Zotkin DN, Yacoob Y.  2001.  Attentive toys. International Conference on Multimedia and Expo. 22:25-25.

Hicks MW, Weirich S.  2001.  A Calculus for Dynamic Loading. Technical Reports (CIS). 

Hicks MW, Moore J, Nettles S.  2001.  Compiling PLAN to SNAP. Active NetworksActive Networks. 2207:134-151.

Grossman D, Morrisett G, Jim T, Hicks MW, Wang Y, Cheney J.  2001.  Cyclone User's Manual, Version 0.1. 3. Computer Science Technical Reports. 

Hicks MW, Moore JT, Nettles S.  2001.  Dynamic software updating. Proceedings of the ACM SIGPLAN 2001 conference on Programming language design and implementation. :13-23.

Habash N, Dorr BJ, Traum D.  2001.  Efficient Language Independent Generation from Lexical Conceptual Structure. 

Ryu KD, Hollingsworth J, Keleher PJ.  2001.  Efficient network and I/O throttling for fine-grain cycle stealing. Proceedings of the 2001 ACM/IEEE conference on Supercomputing (CDROM)  - Supercomputing '01. :3-3.

Pop M, Duncan C, Barequet G, Goodrich M, Huang W, Kumar S.  2001.  Efficient perspective-accurate silhouette computation and applications. Proceedings of the seventeenth annual symposium on Computational geometry. :60-68.

Graves TL, Harrold M J, Kim J-M, Porter A, Rothermel G.  2001.  An empirical study of regression test selection techniques. ACM Transactions on Software Engineering and MethodologyACM Trans. Softw. Eng. Methodol.. 10(2):184-208.

Levy S, Hannenhalli S, Workman C.  2001.  Enrichment of Regulatory Signals in Conserved Non-Coding Genomic Sequence. BioinformaticsBioinformatics. 17(10):871-877.

Marchionini G, Hert C, Shneiderman B, Liddy L.  2001.  E-tables: Non-specialist use and understanding of statistical data. SURFACE, the Syracuse University Research Facility And Collaborative Environment. :33-33.

Barrett C, Cook D, Hicks G, Faber V, Marathe A, Marathe M, Srinivasan A, Sussmann Y, Thornquist H.  2001.  Experimental Analysis of Algorithms for Bilateral-Contract Clearing Mechanisms Arising in Deregulated Power Industry. Algorithm EngineeringAlgorithm Engineering. 2141:172-184.

Dhaliwal S, Gupta SK, Huang J, Kumar M.  2001.  A feature-based approach to automated design of multi-piece sacrificial molds. Journal of Computing and Information Science in Engineering. 1:225-225.

Fermüller C, Aloimonos Y.  2001.  Geometry of Eye Design: Biology and Technology. Multi-Image Analysis. 2032:22-38.

Hochheiser H, Shneiderman B.  2001.  Interactive Exploration of Time Series Data. Discovery ScienceDiscovery Science. 2226:441-446.

Hovemeyer D, Pugh W.  2001.  More efficient network class loading through bundling. Proceedings of the 2001 Symposium on Java TM Virtual Machine Research and Technology Symposium-Volume 1. :17-17.

Moore JT, Hicks MW, Nettles S.  2001.  Practical programmable packets. IEEE INFOCOM 2001. Twentieth Annual Joint Conference of the IEEE Computer and Communications Societies. Proceedings. 1:41-50vol.1-41-50vol.1.

Hannenhalli S, Levy S.  2001.  Promoter prediction in the human genome. Bioinformatics. 17(Suppl 1):S90-S96-S90-S96.

Segal MR, Cummings MP, Hubbard AE.  2001.  Relating amino acid sequence to phenotype: analysis of peptide-binding data. Biometrics. 57(2):632-642.

Chai J, Jimmy Lin, Zadrozny W, Ye Y, Stys-Budzikowska M, Horvath V, Kambhatla N, Wolf C.  2001.  The role of a natural language conversational interface in online sales: A case study. International Journal of Speech Technology. 4(3):285-295.

Hicks MW, Weirich S, Crary K.  2001.  Safe and Flexible Dynamic Linking of Native Code. Types in Compilation. 2071:147-176.

Eom H, Hollingsworth J.  2001.  A tool to help tune where computation is performed. IEEE Transactions on Software Engineering. 27(7):618-629.

Chipman G, Plaisant C, Gahagan S, Herrmann JW, Hewitt S, Reaves L.  2001.  Understanding Manufacturing Systems with a Learning Historian for User-Directed Experimentation. CS-TR-4243

Shneiderman B, Hochheiser H.  2001.  Universal usability as a stimulus to advanced interface design. Behaviour & Information Technology. 20(5):367-376.

Hochheiser H, Shneiderman B.  2001.  Universal usability statements: Marking the trail for all users. interactions. 8(2):16-18.

Hochheiser H, Shneiderman B.  2001.  Using interactive visualizations of WWW log data to characterize access patterns and inform site design. Journal of the American Society for Information Science and Technology. 52(4):331-343.

Hao X, Varshney A.  2001.  Variable-precision rendering. Proceedings of the 2001 symposium on Interactive 3D graphics. :149-158.

Hochheiser H, Shneiderman B.  2001.  Visual specification of queries for finding patterns in time-series data. Proceedings of discovery science. :441-446.

Hassin R, Khuller S.  2001.  z-Approximations. Journal of Algorithms. 41(2):429-442.

Hicks MW, Nettles S.  2000.  Active Networking Means Evolution (or Enhanced Extensibility Required). Active NetworksActive Networks. 1942:16-32.

Hellerstein JM, Franklin MJ, Chandrasekaran S, Deshpande A, Hildrum K, Madden S, Raman V, Shah MA.  2000.  Adaptive query processing: Technology in evolution. IEEE Data Engineering Bulletin. 23(2):7-18.

El-Sayed NM, Hegde P, Quackenbush J, Melville SE, Donelson JE.  2000.  The African trypanosome genome. International Journal for Parasitology. 30(4):329-345.

Ertugay O, Hicks MW, Smith J, Kornblum J.  2000.  Agents in Network Management. Technical Reports (CIS). 

Hannenhalli S, Russell RB.  2000.  Analysis and prediction of functional sub-types from protein sequence alignments. Journal of Molecular Biology. 303(1):61-76.

Buck B, Hollingsworth J.  2000.  An API for Runtime Code Patching. International Journal of High Performance Computing Applications. 14(4):317-329.

Guttmann-Beck N, Hassin R, Khuller S, Raghavachari B.  2000.  Approximation algorithms with bounded performance guarantees for the clustered traveling salesman problem. Algorithmica. 28(4):422-437.

Zotkin DN, Duraiswami R, Davis LS, Haritaoglu I.  2000.  An audio-video front-end for multimedia applications. 2000 IEEE International Conference on Systems, Man, and Cybernetics. 2:786-791vol.2-786-791vol.2.

Cook D, Hicks G, Faber V, Marathe MV, Srinivasan A, Sussmann YJ, Thornquist H.  2000.  Combinatorial Problems Arising in Deregulated Electrical Power Industry: Survey and Future Directions. NONCONVEX OPTIMIZATION AND ITS APPLICATIONS. 42:138-162.

Chai J, Jimmy Lin, Zadrozny W, Ye Y, Budzikowska M, Horvath V, Kambhatla N, Wolf C.  2000.  Comparative Evaluation of a Natural Language Dialog Based System and a Menu-Driven System for Information Access: A Case Study. In Proceedings of the International Conference on Multimedia Information Retrieval (RIAO 2000). 

Hochheiser H, Shneiderman B.  2000.  Coordinating overviews and detail views of WWW log data. Workshop on New Paradigms in Information Visualization and Manipulation (NPIVM 2000), ACM Press. 

Alborzi H, Druin A, Montemayor J, Platner M, Porteous J, Sherman L, Boltman A, Taxén G, Best J, Hammer J et al..  2000.  Designing StoryRooms: interactive storytelling spaces for children. Proceedings of the 3rd conference on Designing interactive systems: processes, practices, methods, and techniques. :95-104.

Benford S, Bederson BB, \AAkesson KP, Bayon V, Druin A, Hansson P, Hourcade JP, Ingram R, Neale H, O'Malley C et al..  2000.  Designing storytelling technologies to encouraging collaboration between young children. Proceedings of the SIGCHI conference on Human factors in computing systems. :556-563.

Kurc T, Uysal M, Eom H, Hollingsworth J, Saltz J, Sussman A.  2000.  Efficient performance prediction for large-scale, data-intensive applications. International Journal of High Performance Computing Applications. 14(3):216-216.

Ryu K D, Hollingsworth J.  2000.  Exploiting fine-grained idle periods in networks of workstations. IEEE Transactions on Parallel and Distributed Systems. 11(7):683-698.

Marchionini G, Hert C, Liddy L, Shneiderman B.  2000.  Extending understanding of federal statistics in tables. Proceedings of the 2000 annual national conference on Digital government research. :1-7.

Tanin E, Lotem A, Haddadin I, Shneiderman B, Plaisant C, Slaughter L.  2000.  Facilitating data exploration with query previews: A study of user performance and preference. Behaviour & Information Technology. 19(6):393-403.

Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF et al..  2000.  The genome sequence of Drosophila melanogaster. Science. 287(5461):2185-2185.

Le Moigne J, Netanyahu NS, Masek JG, Mount D, Goward S, Honzak M.  2000.  Geo-registration of Landsat data by robust matching of wavelet features. Geoscience and Remote Sensing Symposium, 2000. Proceedings. IGARSS 2000. IEEE 2000 International. 4:1610-1612vol.4-1610-1612vol.4.

Bafna V, Hannenhalli S, Rice K, Vawter L.  2000.  Ligand-Receptor Pairing Via Tree Comparison. Journal of Computational Biology. 7(1-2):59-70.

Huang M, Mayergoyz ID, Goldsman N.  2000.  Numerical simulation of small-signal microwave performance of 4H?SiC MESFET. Solid-State Electronics. 44(7):1281-1287.

Hochheiser H, Shneiderman B.  2000.  Performance Benefits of Simultaneous Over Sequential Menus as Task Complexity Increases. International Journal of Human-Computer Interaction. 12(2):173-192.

Hollingsworth J, Keleher PJ, Ryu KD.  2000.  Resource-aware meta-computing. Emphasizing Distributed SystemsEmphasizing Distributed Systems. Volume 53:109-169.

Royer EM, Toh CK, Hicks MW, Kakkar P, Moore JT, Hicks MW, Moore JT, Alexander DS, Gunter CA, Nettles S et al..  2000.  A Review of Current Routing Protocols for Ad Hoc. IEEE Personal Communications. 29:156-71.

Crary K, Hicks MW, Weirich S.  2000.  Safe and Flexible Dynamic Linking of Native Code. Technical Reports (CIS). 

Anagnostakis K, Hicks MW, Ioannidis S, Keromytis A, Smith J.  2000.  Scalable Resource Control in Active Networks. Active NetworksActive Networks. 1942:343-357.

Eom H, Hollingsworth J.  2000.  Speed vs. Accuracy in Simulation for I/O-Intensive Applications. Parallel and Distributed Processing Symposium, International. :315-315.

Shneiderman B, Hewett T.  2000.  A Trip Report on Creativity and Cognition 1999: An Insider's Report on a Far Out Conference. SIGCHI BULLETIN. 32(1):43-46.

Buck BR, Hollingsworth J.  2000.  Using hardware performance monitors to isolate memory bottlenecks. Proceedings of the 2000 ACM/IEEE conference on Supercomputing (CDROM). :40-40.

Ertl T, Hamann B, Varshney A.  2000.  Visualization 2000. 

Hannenhalli S, Hayes WS, Hatzigeorgiou AG, Fickett JW.  1999.  Bacterial Start Site Prediction. Nucleic Acids ResearchNucl. Acids Res.. 27(17):3577-3582.

Hollingsworth J, Miller EL, Akala K.  1999.  Binary version management for computational grids. Parallel processing letters. 9(2):215-225.

Moore JT, Hicks MW, Nettles S.  1999.  Chunks in PLAN: Language support for programs as packets. PROCEEDINGS OF THE ANNUAL ALLERTON CONFERENCE ON COMMUNICATION CONTROL AND COMPUTING. 37:PROCEEDINGSOFTHEANNUALALLERTONCONFERENCEONCOMMUNICATIONCONTROLANDCOMPUTING-PROCEEDINGSOFTHEANNUALALLERTONCONFER.

Lücke C, Fushman D, Ludwig C, Hamilton JA, Sacchettini JC, Rüterjans H.  1999.  A comparative study of the backbone dynamics of two closely related lipid binding proteins: Bovine heart fatty acid binding protein and porcine ileal lipid binding protein. Molecular and Cellular Biochemistry. 192(1):109-121.

Druin A, Montemayor J, Hendler J, McAlister B, Boltman A, Fiterman E, Plaisant A, Kruskal A, Olsen H, Revett I et al..  1999.  Designing PETS: a personal electronic teller of stories. Proceedings of the SIGCHI conference on Human factors in computing systems: the CHI is the limit. :326-329.

Helman D, JaJa JF.  1999.  Designing practical efficient algorithms for symmetric multiprocessors. Algorithm Engineering and Experimentation. :663-663.

Lindsay FE, Townshend JRG, JaJa JF, Humphries J, Plaisant C, Shneiderman B.  1999.  Developing the next generation of Earth science data systems: the Global Land Cover Facility. Geoscience and Remote Sensing Symposium, 1999. IGARSS '99 Proceedings. IEEE 1999 International. 1:616-618vol.1-616-618vol.1.

Keleher PJ, Hollingsworth J, Perkovic D.  1999.  Exposing Application Alternatives. Distributed Computing Systems, International Conference on. :0384-0384.

Cukier M, Chandra R, Henke D, Pistole J, Sanders WH.  1999.  Fault injection based on a partial view of the global state of a distributed system. :168-177.

Han Z, Lin C-K, Goldsman N, Mayergoyz ID, Yu S, Stettler M.  1999.  Gate leakage current simulation by Boltzmann transport equation and its dependence on the gate oxide thickness. Simulation of Semiconductor Processes and Devices, 1999. SISPAD '99. 1999 International Conference on. :247-250.

Hollingsworth J, Maneewongvatana S.  1999.  Imprecise Calendars: an Approach to Scheduling Computational Grids. Distributed Computing Systems, International Conference on. :0352-0352.

Bel N, Dorr BJ, Hovy E, Knight K, Iida H, Boitet C, Maegaard B, Wilks Y.  1999.  Machine Translation. Multilingual Information Management: Current Levels and Future Abilities. :18-18.

Hicks MW, Kakkar P, Moore J, Gunter C, Nettles S.  1999.  Network Programming Using PLAN. Internet Programming LanguagesInternet Programming Languages. 1686:127-143.

Boyer KL, Sarkar S, Feldman J, Granlund G, Horaud R, Hutchinson S, Jacobs DW, Kak A, Lowe D, Malik J.  1999.  Perceptual Organization in Computer Vision. 

Hicks MW, Kakkar P, Moore JT, Gunter CA, Nettles S.  1999.  PLAN: A programming language for active networks. ACM SIGPLAN NOTICES. 34:86-93.

Hicks MW.  1999.  PLAN Service Programmer's Guide for PLAN version 3.2. University of Pennsylvania. 

Hicks MW, Moore JT, Alexander DS, Gunter CA, Nettles SM.  1999.  PLANet: an active internetwork. IEEE INFOCOM '99. Eighteenth Annual Joint Conference of the IEEE Computer and Communications Societies. Proceedings. 3:1124-1133vol.3-1124-1133vol.3.

Wolski R, Spring N, Hayes J.  1999.  Predicting the CPU availability of time-shared Unix systems on the computational grid. The Eighth International Symposium on High Performance Distributed Computing, 1999. Proceedings. :105-112.

Helman DR, JaJa JF.  1999.  Prefix computations on symmetric multiprocessors. Parallel and Distributed Processing, 1999. 13th International and 10th Symposium on Parallel and Distributed Processing, 1999. 1999 IPPS/SPDP. Proceedings. :7-13.

Zotkin DN, Duraiswami R, Hariatoglu I, Davis LS, Otsuka T.  1999.  A real-time audio?video front-end for multimedia applications. The Journal of the Acoustical Society of America. 106:2271-2271.

Plaisant C, Venkatraman M, Ngamkajorwiwat K, Barth R, Harberts B, Feng W.  1999.  Refining query previews techniques for data with multivalued attributes: the case of NASA EOSDIS. Research and Technology Advances in Digital Libraries, 1999. ADL '99. Proceedings. IEEE Forum on. :50-59.

Kakkar P, Hicks MW, Moore J, Gunter CA.  1999.  Specifying the PLAN Network Programming Langauge. Electronic Notes in Theoretical Computer Science. 26:87-104.

Deshpande A, Huang R, Raman V, Riggs T, Song D, Subramanian L.  1999.  A Study of the Structure of the Web. University of California, Berkeley. 

Harris C, Allen RB, Plaisant C, Shneiderman B.  1999.  Temporal visualization for legal case histories. PROCEEDINGS OF THE ANNUAL MEETING-AMERICAN SOCIETY FOR INFORMATION SCIENCE. 36:271-279.

Golub GH, Hansen P C, O'Leary DP.  1999.  Tikhonov Regularization and Total Least Squares. SIAM Journal on Matrix Analysis and Applications. 21(1):185-194.

Hannenhalli S, Pevzner PA.  1999.  Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. J. ACM. 46(1):1-27.

Hicks MW, Jagannathan S, Kelsey R, Moore JT, Ungureanu C.  1999.  Transparent communication for distributed objects in Java. Proceedings of the ACM 1999 conference on Java Grande. :160-170.

Hochheiser H, Shneiderman B.  1999.  Understanding Patterns of User Visits to Web Sites: Interactive Starfield Visualization of WWW Log Data-Short Version. Tech Report HCIL-99-06. 

Hochheiser H, Shneiderman B.  1999.  Using Interactive Visualizations of WWW Log Data to Characterize Access Patterns and Inform Site Design. Institute for Systems Research Technical Reports. 

Cukier M, Ren J, Sabnis C, Henke D, Pistole J, Sanders WH, Bakken DE, Berman ME, Karr DA, Schantz RE.  1998.  AQuA: an adaptive architecture that provides dependable distributed objects. Seventeenth IEEE Symposium on Reliable Distributed Systems. :245-253.

Hollingsworth J, Guven E, Akinlar C.  1998.  Benchmarking a network of PCs running parallel applications. Performance, Computing and Communications, 1998. IPCCC '98., IEEE International. :1-7.

Oard D, Dorr BJ, Hackett P, Katsova M.  1998.  A Comparative Study of Knowledge-Based Approaches for Cross-Language. 

Hollingsworth J.  1998.  Critical path profiling of message passing and shared-memory programs. IEEE Transactions on Parallel and Distributed Systems. 9(10):1029-1040.

Rao Kosaraju S, Pop M.  1998.  De-amortization of Algorithms. Computing and CombinatoricsComputing and Combinatorics. 1449:4-14.

Carr D, Plaisant C, Hasegawa H.  1998.  The Design of a Telepathology Workstation: Exploring Remote Images. Technical Reports of the Computer Science Department. 

Carr D, Plaisant C, Hasegawa H.  1998.  Designing a real-time telepathology workstation to mitigate communication delays. Interacting with Computers. 11(1):33-52.

Shneiderman B, Plaisant C, Botafogo R, Hopkins D, Weiland W.  1998.  Designing to facilitate browsing: A look back at the Hyperties workstation browser. Technical Reports of the Computer Science Department, University of Maryland. 

Olsen M, Dorr BJ, Thomas S.  1998.  Enhancing Automatic Acquisition of Thematic Structure in a Large-Scale Lexicon for Mandarin Chinese. Machine Translation and the Information SoupMachine Translation and the Information Soup. 1529:41-50.

Tanin E, Lotem A, Haddadin I, Shneiderman B, Plaisant C, Slaughter L.  1998.  Facilitating Network Data Exploration with Query Previews: A Study of User Performance and Preference. Technical Reports of the Computer Science Department. 

Hollingsworth J, Miller B.  1998.  Instrumentation and measurement. The grid. :339-365.

Eom H, Hollingsworth J.  1998.  LBF: a performance metric for program reorganization. 18th International Conference on Distributed Computing Systems, 1998. Proceedings. :222-229.

Dorr BJ, Katsova M.  1998.  Lexical Selection for Cross-Language Applications: Combining LCS with WordNet. Machine Translation and the Information SoupMachine Translation and the Information Soup. 1529:438-447.

Plaisant C, Mushlin R, Snyder A, Li J, Heller D, Shneiderman B.  1998.  LifeLines: using visualization to enhance navigation and analysis of patient records.. Proceedings of the AMIA Symposium. :76-80.

Plaisant C, Mushlin R, Snyder A, Li J, Heller D, Shneiderman B.  1998.  LifeLines: using visualization to enhance navigation and analysis of patient records. In Proceedings of the 1998 American Medical Informatic Association Annual Fall SymposiumProc AMIA Symp. :76-80.

Ryu KD, Hollingsworth J.  1998.  Linger longer: Fine-grain cycle stealing for networks of workstations. Proceedings of the 1998 ACM/IEEE Conference on Supercomputing (CDROM). :1-12.

Waheed A, Rover DT, Hollingsworth J.  1998.  Modeling and evaluating design alternatives for an on-line instrumentation system: a case study. IEEE Transactions on Software Engineering. 24(6):451-470.

Donelson JE, Hill KL, El-Sayed NM.  1998.  Multiple mechanisms of immune evasion by African trypanosomes. Molecular and Biochemical Parasitology. 91(1):51-66.

Helman DR, JaJa JF, Bader DA.  1998.  A new deterministic parallel sorting algorithm with an experimental evaluation. Journal of Experimental Algorithmics (JEA). 3

Heyman DP, O'Leary DP.  1998.  Overcoming Instability In Computing The Fundamental Matrix For A Markov Chain. SIAM Journal on Matrix Analysis and Applications. 19(2):534-540.

Helman DR, Bader DA, JaJa JF.  1998.  A Parallel Sorting Algorithm With an Experimental Study. UMIACS-TR-95-102

Mink A, Salamon W, Hollingsworth J, Arunachalam R.  1998.  Performance measurement using low perturbation and high precision hardware assists. , The 19th IEEE Real-Time Systems Symposium, 1998. Proceedings. :379-388.

Hicks MW, Kakkar P, Moore JT, Gunter CA, Nettles S.  1998.  PLAN: a packet language for active networks. SIGPLAN Not.. 34(1):86-93.

Hicks MW.  1998.  PLAN Security System. Technical Reports (CIS). 

Hicks MW.  1998.  PLAN Service Programmer's Guide. University of Pennsylvania. 

Hicks MW, Kakkar P, Moore JT, Gunter CA, Alexander DS, Nettles S.  1998.  The PLAN system for building Active Networks. University of Pennsylvania (February 27, 1998). 

Hollingsworth J, Keleher PJ.  1998.  Prediction and Adaptation in Active Harmony. High-Performance Distributed Computing, International Symposium on. :180-180.

Helman DR, Bader DA, JaJa JF.  1998.  A Randomized Parallel Sorting Algorithm with an Experimental Study. Journal of Parallel and Distributed Computing. 52(1):1-23.

Hicks MW, Hornof L, Moore JT, Nettles SM.  1998.  A study of large object spaces. Proceedings of the 1st international symposium on Memory management. :138-145.

Alexander DS, Arbaugh WA, Hicks MW, Kakkar P, Keromytis AD, Moore JT, Gunter CA, Nettles SM, Smith JM.  1998.  The SwitchWare active network architecture. IEEE Network. 12(3):29-36.

Alexander DS, Hicks MW, Kakkar P, Keromytis AD, Shaw M, Moore JT, Gunter CA, Jim T, Nettles SM, Smith JM.  1998.  The switchware active network implementation. The ML Workshop, International Conference on Functional Programming (ICFP). 

Dorr BJ, Habash N, Traum D.  1998.  A Thematic Hierarchy for Efficient Generation from Lexical-Conceptual Structure. Machine Translation and the Information SoupMachine Translation and the Information Soup. 1529:333-343.

Tilghman S, Astin HS, Brinkley W, Chilton MD, Cummings MP, Ehrenberg RG, Fox MF, Glenn K, Green PJ, Hans S et al..  1998.  Trends in the Early Careers of Life Scientists. 

Tilghman S, Astin HS, Brinkley W, Chilton MD, Cummings MP, Ehrenberg RG, Fox MF, Glenn K, Green PJ, Hans S et al..  1998.  Trends in the early careers of life scientists - Preface and executive summary. Mol Biol Cell. 9(11):3007-3015.

Hicks MW.  1998.  Types and intermediate representations. Technical Reports (CIS). :796-796.

Plaisant C, Heller D, Li J, Shneiderman B, Mushlin R, Karat J.  1998.  Visualizing medical records with LifeLines. CHI 98 conference summary on Human factors in computing systems. :28-29.

Higham NJ, Stewart G.W.  1997.  Accuracy and Stability of Numerical Algorithms. SIAM Review. 39(1):164-165.

Doermann D, Sauvola J, Haapakoski S, Kauniskangas H, Seppanen T, Pietikainen M.  1997.  ADistributed Management System for Testing Document Image Database Analysis Algorithms. ICDAR. :989-995.

Scarlatos LL, Darken RP, Harada K, Heeter C, Muller R, Shneiderman B.  1997.  Designing interactive multimedia (panel). Proceedings of the fifth ACM international conference on Multimedia. :215-218.

DAN?ÍK V, Hannenhalli S, Muthukrishnan S.  1997.  Hardness of flip-cut problems from optical mapping. Journal of Computational Biology. 4(2):119-125.

Dancik V, Hannenhalli S, Muthukrishnan S.  1997.  Hardness of flip-cut problems from optical mapping [DNA molecules application]. Compression and Complexity of Sequences 1997. Proceedings. :275-284.

Druin A, Stewart J, Proft D, Bederson BB, Hollan J.  1997.  KidPad: a design collaboration between children, technologists, and educators. Proceedings of the SIGCHI conference on Human factors in computing systems. :463-470.

Agarwala R, Batzoglou S, Dan?íK V, Decatur SE, Hannenhalli S, Farach M, Muthukrishnan S, Skiena S.  1997.  Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. Journal of Computational Biology. 4(3):275-296.

Hollingsworth J, Niam O, Miller BP, Xu Z, Goncalves MJR, Zheng L.  1997.  MDL: a language and compiler for dynamic program instrumentation. , 1997 International Conference on Parallel Architectures and Compilation Techniques., 1997. Proceedings. :201-212.

Hicks MW, Moore JT, Nettles SM.  1997.  The measured cost of copying garbage collection mechanisms. SIGPLAN Not.. 32(8):292-305.

Heckbert P, Rossignac J, Hoppe H, Schroeder W, Soucy M, Varshney A.  1997.  Multiresolution surface modeling. SIGGRAPH 1997 Course Notes. 

Hansen P C, O'Leary DP.  1997.  Regularization algorithms based on total least squares. Recent advances in total least squares techniques and errors-in-variables modeling (Leuven, 1996)Recent advances in total least squares techniques and errors-in-variables modeling (Leuven, 1996). :127-137.

Fierro RD, Golub GH, Hansen PC, O'Leary DP.  1997.  Regularization by Truncated Total Least Squares. SIAM Journal on Scientific Computing. 18(4):1223-1241.

Edjlali G, Agrawal G, Sussman A, Humphries J, Saltz J.  1997.  Run-time and compiler support for programming in adaptive parallel environments. Scientific Programming. 6(2):215-227.

Moore JT, Hicks MW.  1997.  A Service Layer Routing Protocol for PLAN. PLAN documentation, September. 

Hollingsworth J, Miller EL.  1997.  Using content-derived names for configuration management. ACM SIGSOFT Software Engineering Notes. 22(3):104-109.

Ferreira R, Moon B, Humphries J, Sussman A, Saltz J, Miller R, Demarzo A.  1997.  The virtual microscope.. Proceedings of the AMIA Annual Fall Symposium. :449-449.

Davis LS, Fejes S, Harwood D, Yacoob Y, Hariatoglu I, Black M.  1997.  Visual surveillance of human activity. Computer Vision?ACCV'98. :267-274.

Bederson BB, Hollan JD, Stewart J, Rogers D, Druin A, Vick D, Ring L, Grose E, Forsythe C.  1997.  A zooming web browser. Human Factors in Web Development. 

Hollingsworth J, Miller B.  1996.  An adaptive cost system for parallel program instrumentation. Euro-Par'96 Parallel Processing. :88-97.

Ruppin E, Horn D, Levy N, Reggia JA.  1996.  Computational studies of synaptic alterations in Alzheimer?s disease. Neural modeling of brain and cognitive disorders. :63-87.

Horprasert T, Yacoob Y, Davis LS.  1996.  Computing 3-D head orientation from a monocular image sequence. Automatic Face and Gesture Recognition, 1996., Proceedings of the Second International Conference on. :242-247.

He T, Hong L, Varshney A, Wang SW.  1996.  Controlled topology simplification. Visualization and Computer Graphics, IEEE Transactions on. 2(2):171-184.

Berman P, Hannenhalli S.  1996.  Fast sorting by reversal. Combinatorial Pattern MatchingCombinatorial Pattern Matching. 1075:168-185.

Otto SP, Cummings MP, Wakeley J.  1996.  Inferring phylogenies from DNA sequence data: The effects of sampling. New Uses for New PhylogeniesNew Uses for New Phylogenies. :103-115.

Bederson BB, Hollan JD, Druin A, Stewart J, Rogers D, Proft D.  1996.  Local tools: an alternative to tool palettes. Proceedings of the 9th annual ACM symposium on User interface software and technology. :169-170.

Waheed A, Rover DT, Hollingsworth J.  1996.  Modeling, Evaluation, and Testing of Paradyn Instrumentation System. Proceedings of the 1996 ACM/IEEE Conference on Supercomputing, 1996. :18-18.

Ruppin E, Reggia JA, Horn D.  1996.  A neural model of positive schizophrenic symptoms. Schizophrenia Bulletin. 22(1):105-123.

Hollingsworth J.  1996.  An online computation of critical path profiling. Proceedings of the SIGMETRICS symposium on Parallel and distributed tools. :11-20.

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Helman DR, Bader DA, JaJa JF.  1996.  Parallel algorithms for personalized communication and sorting with an experimental study (extended abstract). Proceedings of the eighth annual ACM symposium on Parallel algorithms and architectures. :211-222.

Ruppin E, Reggia JA, Horn D.  1996.  Pathogenesis of schizophrenic delusions and hallucinations: a neural model. Schizophrenia bulletin. 22(1):105-105.

Hannenhalli S.  1996.  Polynomial-time algorithm for computing translocation distance between genomes. Discrete Applied Mathematics. 71(1?3):137-151.

Hannenhalli S, Feldman W, Lewis HF, Skiena SS, Pevzner PA.  1996.  Positional sequencing by hybridization. Computer applications in the biosciences : CABIOS. 12(1):19-24.

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Hori O, Doermann D.  1996.  Table-Form Structure Analysis Based on Box-Driven Reasoning. IEICE TRANSACTIONS on Information and Systems. E79-D(5):542-547.

Hannenhalli S, Pevzner P.  1996.  To cut? or not to cut (applications of comparative physical maps in molecular evolution). Proceedings of the seventh annual ACM-SIAM symposium on Discrete algorithms. :304-313.

Acharya A, Uysal M, Bennett R, Mendelson A, Beynon M, Hollingsworth J, Saltz J, Sussman A.  1996.  Tuning the performance of I/O-intensive parallel applications. Proceedings of the fourth workshop on I/O in parallel and distributed systems: part of the federated computing research conference. :15-27.

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Callahan J, Hopkins D, Weiser M, Shneiderman B.  1988.  An empirical comparison of pie vs. linear menus. Proceedings of the SIGCHI conference on Human factors in computing systems. :95-100.

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