@conference {17113,
	title = {Dynamic querying for pattern identification in microarray and genomic data},
	booktitle = {2003 International Conference on Multimedia and Expo, 2003. ICME {\textquoteright}03. Proceedings},
	volume = {3},
	year = {2003},
	month = {2003/07/06/9},
	pages = {III- 453-6 vol.3 - III- 453-6 vol.3},
	publisher = {IEEE},
	organization = {IEEE},
	abstract = {Data sets involving linear ordered sequences are a recurring theme in bioinformatics. Dynamic query tools that support exploration of these data sets can be useful for identifying patterns of interest. This paper describes the use of one such tool - timesearcher - to interactively explore linear sequence data sets taken from two bioinformatics problems. Microarray time course data sets involve expression levels for large numbers of genes over multiple time points. Timesearcher can be used to interactively search these data sets for genes with expression profiles of interest. The occurrence frequencies of short sequences of DNA in aligned exons can be used to identify sequences that play a role in the pre-mRNA splicing. Timesearcher can be used to search these data sets for candidate splicing signals.},
	keywords = {Bioinformatics, data sets, Displays, dynamic querying, expression profiles, Frequency, Gene expression, genes, Genetics, genomic data, Genomics, linear ordered sequences, macromolecules, medical signal processing, Mice, Microarray, pattern identification, pattern recognition, premRNA splicing, Query processing, sequences, Signal processing, splicing, TimeSearcher},
	isbn = {0-7803-7965-9},
	doi = {10.1109/ICME.2003.1221346},
	author = {Hochheiser,H. and Baehrecke,E. H and Mount, Stephen M. and Shneiderman, Ben}
}
@conference {16779,
	title = {Integrating distributed scientific data sources with MOCHA and XRoaster},
	booktitle = {Thirteenth International Conference on Scientific and Statistical Database Management, 2001. SSDBM 2001. Proceedings},
	year = {2001},
	month = {2001///},
	pages = {263 - 266},
	publisher = {IEEE},
	organization = {IEEE},
	abstract = {MOCHA is a novel middleware system for integrating distributed data sources that we have developed at the University of Maryland. MOCHA is based on the idea that the code that implements user-defined types and functions should be automatically deployed to remote sites by the middleware system itself. To this end, we have developed an XML-based framework to specify metadata about data sites, data sets, and user-defined types and functions. XRoaster is a graphical tool that we have developed to help the user create all the XML metadata elements to be used in MOCHA},
	keywords = {client-server systems, data sets, data sites, Databases, Distributed computing, distributed databases, distributed scientific data source integration, Educational institutions, graphical tool, hypermedia markup languages, IP networks, java, Large-scale systems, Maintenance engineering, meta data, metadata, Middleware, middleware system, MOCHA, Query processing, remote sites, scientific information systems, user-defined types, visual programming, XML, XML metadata elements, XML-based framework, XRoaster},
	isbn = {0-7695-1218-6},
	doi = {10.1109/SSDM.2001.938560},
	author = {Rodriguez-Martinez,M. and Roussopoulos, Nick and McGann,J. M and Kelley,S. and Mokwa,J. and White,B. and Jala,J.}
}
