@conference {16278,
	title = {MetaPhyler: Taxonomic profiling for metagenomic sequences},
	booktitle = {2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)},
	year = {2010},
	month = {2010/12/18/21},
	pages = {95 - 100},
	publisher = {IEEE},
	organization = {IEEE},
	abstract = {A major goal of metagenomics is to characterize the microbial diversity of an environment. The most popular approach relies on 16S rRNA sequencing, however this approach can generate biased estimates due to differences in the copy number of the 16S rRNA gene between even closely related organisms, and due to PCR artifacts. The taxonomic composition can also be determined from whole-metagenome sequencing data by matching individual sequences against a database of reference genes. One major limitation of prior methods used for this purpose is the use of a universal classification threshold for all genes at all taxonomic levels. We propose that better classification results can be obtained by tuning the taxonomic classifier to each matching length, reference gene, and taxonomic level. We present a novel taxonomic profiler MetaPhyler, which uses marker genes as a taxonomic reference. Results on simulated datasets demonstrate that MetaPhyler outperforms other tools commonly used in this context (CARMA, Megan and PhymmBL). We also present interesting results obtained by applying MetaPhyler to a real metagenomic dataset.},
	keywords = {Bioinformatics, CARMA comparison, Databases, Genomics, Linear regression, marker genes, matching length, Megan comparison, metagenomic sequences, metagenomics, MetaPhyler, microbial diversity, microorganisms, molecular biophysics, molecular configurations, Pattern classification, pattern matching, phylogenetic classification, Phylogeny, PhymmBL comparison, reference gene database, Sensitivity, sequence matching, taxonomic classifier, taxonomic level, taxonomic profiling, whole metagenome sequencing data},
	isbn = {978-1-4244-8306-8},
	doi = {10.1109/BIBM.2010.5706544},
	author = {Liu,Bo and Gibbons,T. and Ghodsi,M. and Pop, Mihai}
}
@article {15379,
	title = {Calculation of head sensitivity function from 3-D magnetic fields},
	journal = {Magnetics, IEEE Transactions on},
	volume = {30},
	year = {1994},
	month = {1994/11//},
	pages = {4278 - 4280},
	abstract = {A head sensitivity function is calculated using 3-D magnetic fields. The 3-D magnetic fields are calculated for recorded tracks with finite widths. The magnetization in the medium is expressed in 2-D Fourier series in the plane of the film and is assumed uniform through the thickness of the film. The reproduce head is idealized. These techniques are applied to data found in the literature for very narrow tracks ( 0.5 mu;m). A surprising amount of the experimental data can be explained by the finite width of the tracks. The fine structure of the measurements can then be isolated and attributed to the particular features of the individual heads},
	keywords = {3-D, fields;finite, fields;magnetic, function;magnetization;recorded, head;very, heads;magnetisation;sensitivity;, magnetic, narrow, Sensitivity, series;magnetic, tracks;Fourier, tracks;reproduce, widths;head},
	isbn = {0018-9464},
	doi = {10.1109/20.334060},
	author = {Burke,E.R. and Gomez,R.D. and Madabhushi,R. and Mayergoyz, Issak D}
}
