@article {16249,
	title = {Comparative Genome Assembly},
	journal = {Briefings in Bioinformatics},
	volume = {5},
	year = {2004},
	month = {2004/09/01/},
	pages = {237 - 248},
	abstract = {One of the most complex and computationally intensive tasks of genome sequence analysis is genome assembly. Even today, few centres have the resources, in both software and hardware, to assemble a genome from the thousands or millions of individual sequences generated in a whole-genome shotgun sequencing project. With the rapid growth in the number of sequenced genomes has come an increase in the number of organisms for which two or more closely related species have been sequenced. This has created the possibility of building a comparative genome assembly algorithm, which can assemble a newly sequenced genome by mapping it onto a reference genome.We describe here a novel algorithm for comparative genome assembly that can accurately assemble a typical bacterial genome in less than four minutes on a standard desktop computer. The software is available as part of the open-source AMOS project.},
	keywords = {Assembly, comparative genomics, open source, shotgun sequencing},
	isbn = {1467-5463, 1477-4054},
	doi = {10.1093/bib/5.3.237},
	url = {http://bib.oxfordjournals.org/content/5/3/237},
	author = {Pop, Mihai and Phillippy,Adam and Delcher,Arthur L. and Salzberg,Steven L.}
}
@conference {12000,
	title = {Eye design in the plenoptic space of light rays},
	booktitle = {Ninth IEEE International Conference on Computer Vision, 2003. Proceedings},
	year = {2003},
	month = {2003/10/13/16},
	pages = {1160-1167 vol.2 - 1160-1167 vol.2},
	publisher = {IEEE},
	organization = {IEEE},
	abstract = {Natural eye designs are optimized with regard to the tasks the eye-carrying organism has to perform for survival. This optimization has been performed by the process of natural evolution over many millions of years. Every eye captures a subset of the space of light rays. The information contained in this subset and the accuracy to which the eye can extract the necessary information determines an upper limit on how well an organism can perform a given task. In this work we propose a new methodology for camera design. By interpreting eyes as sample patterns in light ray space we can phrase the problem of eye design in a signal processing framework. This allows us to develop mathematical criteria for optimal eye design, which in turn enables us to build the best eye for a given task without the trial and error phase of natural evolution. The principle is evaluated on the task of 3D ego-motion estimation.},
	keywords = {3D ego-motion estimation, Assembly, B-splines, Camera design, CAMERAS, captured image, compound eyes, Computer vision, data mining, eye, eye-carrying organism, Eyes, filter optimization, image representation, image resolution, Information geometry, Laboratories, light field reconstruction, light gathering power, light rays, mixed spherical-Cartesian coordinate system, Motion estimation, natural evolution process, natural eye designs, natural image statistics, optical nanotechnology, Optical signal processing, optimal eye design mathematical criteria, Organisms, plenoptic image formation, plenoptic space, plenoptic video geometry, sampling operators, sensory ecology, Signal design, Signal processing, signal processing framework, signal processing tool, square-summable sequences, visual acuity},
	isbn = {0-7695-1950-4},
	doi = {10.1109/ICCV.2003.1238623},
	author = {Neumann, J. and Ferm{\"u}ller, Cornelia and Aloimonos, J.}
}
@article {16314,
	title = {Comparing detection methods for software requirements inspections: a replicated experiment},
	journal = {IEEE Transactions on Software Engineering},
	volume = {21},
	year = {1995},
	month = {1995/06//},
	pages = {563 - 575},
	abstract = {Software requirements specifications (SRS) are often validated manually. One such process is inspection, in which several reviewers independently analyze all or part of the specification and search for faults. These faults are then collected at a meeting of the reviewers and author(s). Usually, reviewers use Ad Hoc or Checklist methods to uncover faults. These methods force all reviewers to rely on nonsystematic techniques to search for a wide variety of faults. We hypothesize that a Scenario-based method, in which each reviewer uses different, systematic techniques to search for different, specific classes of faults, will have a significantly higher success rate. We evaluated this hypothesis using a 3{\texttimes}24 partial factorial, randomized experimental design. Forty eight graduate students in computer science participated in the experiment. They were assembled into sixteen, three-person teams. Each team inspected two SRS using some combination of Ad Hoc, Checklist or Scenario methods. For each inspection we performed four measurements: (1) individual fault detection rate, (2) team fault detection rate, (3) percentage of faults first identified at the collection meeting (meeting gain rate), and (4) percentage of faults first identified by an individual, but never reported at the collection meeting (meeting loss rate). The experimental results are that (1) the Scenario method had a higher fault detection rate than either Ad Hoc or Checklist methods, (2) Scenario reviewers were more effective at detecting the faults their scenarios are designed to uncover, and were no less effective at detecting other faults than both Ad Hoc or Checklist reviewers, (3) Checklist reviewers were no more effective than Ad Hoc reviewers, and (4) Collection meetings produced no net improvement in the fault detection rate-meeting gains were offset by meeting losses},
	keywords = {Assembly, Computer science, Design for experiments, detection methods, Fault detection, fault detection rate, Fault diagnosis, formal specification, formal verification, Gain measurement, individual fault detection rate, Inspection, Loss measurement, nonsystematic techniques, performance evaluation, Performance gain, replicated experiment, scenario-based method, Software development management, software requirements inspections, software requirements specifications, team fault detection rate},
	isbn = {0098-5589},
	doi = {10.1109/32.391380},
	author = {Porter, Adam and Votta,L. G. and Basili, Victor R.}
}
@article {12216,
	title = {A miniature pan-tilt actuator: the spherical pointing motor},
	journal = {IEEE Transactions on Robotics and Automation},
	volume = {10},
	year = {1994},
	month = {1994/06//},
	pages = {298 - 308},
	abstract = {A pan-tilt mechanism is a computer-controlled actuator designed to point an object such as a camera sensor. For applications in active vision, a pan-tilt mechanism should be accurate, fast, small, inexpensive and have low power requirements. The authors have designed and constructed a new type of actuator meeting these requirements, which incorporates both pan and tilt into a single, two-degree-of-freedom device. The spherical pointing motor (SPM) consists of three orthogonal motor windings in a permanent magnetic field, configured to move a small camera mounted on a gimbal. It is an absolute positioning device and is run open-loop. The SPM is capable of panning and tilting a load of 15 grams, for example a CCD image sensor, at rotational velocities of several hundred degrees per second with a repeatability of .15{\textdegree}. The authors have also built a miniature camera consisting of a single CCD sensor chip and miniature lens assembly that fits on the rotor of this motor. In this paper, the authors discuss the theory of the SPM, which includes its basic electromagnetic principles, and derive the relationship between applied currents and resultant motor position. The authors present an automatic calibration procedure and discuss open- and closed-loop control strategies. Finally, the authors present the physical characteristics and results of their prototype},
	keywords = {absolute positioning device, active vision, Actuators, Application software, Assembly, automatic calibration, camera sensor, CAMERAS, CCD image sensors, CCD sensor chip, Charge coupled devices, Charge-coupled image sensors, closed-loop control strategies, computerised control, Lenses, Magnetic fields, miniature lens assembly, miniature pan-tilt actuator, open-loop control strategies, orthogonal motor windings, pan-tilt mechanism, Permanent magnet motors, position control, Scanning probe microscopy, spherical pointing motor, two-degree-of-freedom device},
	isbn = {1042-296X},
	doi = {10.1109/70.294205},
	author = {Bederson, Benjamin B. and Wallace,R.S. and Schwartz,E.L.}
}
